←Back to structures
SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00005
Bact-VirSR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00005
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 159-274
Domain cluster:
rep: KJ803031.1__AID16847.1__vBDshPR2C_32__00032__D58-159
D2
high
residues 287-377
Domain cluster:
rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qexA02 | 2.60.120.640 | Mainly Beta › Sandwich › Jelly Rolls › gp9 | 0.84 | 78.0 | 7.49e-01 | 100.0% | 97.1% |
| 4ml0B00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.60 | 29.0 | 2.97e-01 | 91.2% | 46.7% |
| 2nncA00 | 2.60.40.2470 | Mainly Beta › Sandwich › Immunoglobulin-like › SoxY domain | 0.55 | 39.0 | 3.70e-01 | 86.8% | 61.8% |
| 1fwxA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.55 | 44.0 | 4.11e-01 | 92.3% | 68.6% |
| 1dl5A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 37.0 | 2.97e-01 | 80.2% | 48.8% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 184462 | 520.1.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › T4_gp9_10 | 0.84 | 78.0 | 6.25e-01 | 100.0% | 59.5% |
| 1070458 | 520.1.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › T4_gp9_10 | 0.84 | 78.0 | 6.35e-01 | 100.0% | 65.6% |
| 5053974 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.55 | 47.0 | 4.30e-01 | 95.6% | 73.3% |
| 5056110 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.54 | 46.0 | 4.04e-01 | 94.5% | 74.1% |
| 4981578 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 43.0 | 4.13e-01 | 100.0% | 79.0% |
D3
medium
residues 1-80
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kw2A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.61 | 41.0 | 4.45e-01 | 71.2% | 92.6% |
| 1goiB03 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.58 | 34.0 | 3.99e-01 | 70.0% | 88.2% |
| 4l69A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.58 | 39.0 | 4.20e-01 | 70.0% | 94.1% |
| 4n0qA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 45.0 | 3.67e-01 | 87.5% | 58.0% |
| 3wwxA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 43.0 | 2.92e-01 | 93.8% | 79.1% |
| 1yueA02 | 2.10.10.40 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.52 | 36.0 | 4.03e-01 | 72.5% | 100.0% |
| 4bt2A01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.52 | 36.0 | 3.24e-01 | 71.2% | 50.9% |
| 1aiwA00 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.52 | 34.0 | 3.84e-01 | 72.5% | 88.7% |
| 1agxA01 | 3.40.50.1170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › L-asparaginase, N-terminal domain | 0.51 | 38.0 | 2.88e-01 | 82.5% | 72.2% |