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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00024
Bact-VirSR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00024
Identity
- Kingdom:
- phage
Quality
85.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-93
Domain cluster:
representative
CATH (62)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xpjA00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.95 | 91.0 | 8.05e-01 | 100.0% | 83.9% |
| 4xrpA02 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.84 | 77.0 | 6.77e-01 | 97.8% | 99.2% |
| 1cqzA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.75 | 69.0 | 5.67e-01 | 100.0% | 95.7% |
| 1u7pD00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.75 | 69.0 | 5.66e-01 | 100.0% | 90.7% |
| 2b0cA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.74 | 69.0 | 6.03e-01 | 100.0% | 94.7% |
| 1k1eD00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.73 | 66.0 | 5.37e-01 | 100.0% | 83.5% |
| 1cqzB01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.73 | 67.0 | 5.85e-01 | 100.0% | 95.6% |
| 3e58B01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.72 | 67.0 | 5.64e-01 | 100.0% | 93.2% |
| 3e8mA00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.71 | 65.0 | 5.31e-01 | 100.0% | 86.6% |
| 4ex6A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.71 | 65.0 | 5.43e-01 | 100.0% | 92.8% |
| 4navA00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.70 | 64.0 | 5.09e-01 | 100.0% | 77.9% |
| 3shqA02 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.70 | 64.0 | 4.77e-01 | 100.0% | 76.2% |
| 2b30A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.69 | 63.0 | 5.03e-01 | 100.0% | 88.6% |
| 3l5kA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.68 | 62.0 | 5.18e-01 | 100.0% | 89.2% |
| 3kbbA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.68 | 62.0 | 5.29e-01 | 100.0% | 95.8% |
| 4qjbB01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.66 | 59.0 | 4.92e-01 | 100.0% | 94.4% |
| 2jaxA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.64 | 57.0 | 5.19e-01 | 98.9% | 98.4% |
| 3lm3A01 | 3.20.20.510 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Uncharacterised protein PF12979, DUF3863 | 0.62 | 55.0 | 3.85e-01 | 100.0% | 72.0% |
| 3c5cB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 46.0 | 3.82e-01 | 84.8% | 44.3% |
| 2ex2A02 | 3.50.80.20 | Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-Ala-D-Ala carboxypeptidase C, peptidase S13 | 0.61 | 50.0 | 4.85e-01 | 98.9% | 80.6% |
| 2y0eB03 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 54.0 | 4.14e-01 | 100.0% | 58.4% |
| 4nv0A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.60 | 54.0 | 4.11e-01 | 100.0% | 77.4% |
| 3pvsB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 42.0 | 3.61e-01 | 83.7% | 44.4% |
| 1kamA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.60 | 53.0 | 4.32e-01 | 100.0% | 75.0% |
| 4nesA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.60 | 54.0 | 4.48e-01 | 100.0% | 81.6% |
| 4cvhA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.60 | 53.0 | 3.99e-01 | 100.0% | 88.8% |
| 4j5rA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.60 | 45.0 | 4.03e-01 | 83.7% | 89.4% |
| 1oy1C00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.60 | 46.0 | 3.61e-01 | 85.9% | 50.0% |
| 7va8A01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.59 | 54.0 | 3.87e-01 | 100.0% | 78.2% |
| 3pm6A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 46.0 | 3.30e-01 | 85.9% | 28.6% |
| 1lwjA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.59 | 51.0 | 3.57e-01 | 100.0% | 94.2% |
| 1y97A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.58 | 48.0 | 3.79e-01 | 91.3% | 87.5% |
| 2q02A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.58 | 48.0 | 3.50e-01 | 92.4% | 67.6% |
| 4kt7A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.58 | 52.0 | 3.91e-01 | 100.0% | 88.1% |
| 6xl1A01 | 3.40.50.10770 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein VC1899 like domain (Restriction endonuclease-like) | 0.58 | 51.0 | 4.34e-01 | 100.0% | 83.9% |
| 2vshA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.58 | 51.0 | 3.87e-01 | 98.9% | 91.5% |
| 4xfjB01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.58 | 47.0 | 3.90e-01 | 91.3% | 94.2% |
| 3bzcA03 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.57 | 48.0 | 4.42e-01 | 96.7% | 87.5% |
| 4zocA02 | 3.40.50.1700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain | 0.56 | 46.0 | 3.44e-01 | 91.3% | 57.5% |
| 2b3yA03 | 3.30.499.10 | Alpha Beta › 2-Layer Sandwich › Aconitase; domain 3 › Aconitase, domain 3 | 0.56 | 46.0 | 3.53e-01 | 92.4% | 75.4% |
| 1xccD01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 48.0 | 4.17e-01 | 98.9% | 80.4% |
| 1zlpA00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.55 | 47.0 | 3.46e-01 | 100.0% | 78.5% |
| 1yu9A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 46.0 | 3.86e-01 | 94.6% | 93.4% |
| 4bwvA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.55 | 48.0 | 3.67e-01 | 100.0% | 61.7% |
| 6ckmA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.55 | 48.0 | 3.67e-01 | 100.0% | 76.9% |
| 3o3mD03 | 3.40.50.11900 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 42.0 | 3.70e-01 | 85.9% | 84.9% |
| 2atcA02 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.54 | 48.0 | 4.08e-01 | 100.0% | 84.3% |
| 4g1vA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.54 | 47.0 | 4.15e-01 | 97.8% | 84.6% |
| 1z2aA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 45.0 | 3.80e-01 | 94.6% | 93.3% |
| 1qo2A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 46.0 | 3.51e-01 | 100.0% | 95.0% |
| 3cvjC00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.54 | 46.0 | 3.49e-01 | 98.9% | 86.7% |
| 6ifdB00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.53 | 47.0 | 3.53e-01 | 100.0% | 75.6% |
| 1pzxB01 | 3.40.50.10440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 | 0.53 | 45.0 | 4.12e-01 | 94.6% | 80.3% |
| 1h3mB00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.53 | 47.0 | 3.59e-01 | 100.0% | 90.8% |
| 2p0oA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 46.0 | 3.46e-01 | 97.8% | 80.3% |
| 1rrmA01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 43.0 | 3.49e-01 | 91.3% | 89.1% |
| 1w55A01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.52 | 46.0 | 3.61e-01 | 100.0% | 89.9% |
| 1c96A03 | 3.30.499.10 | Alpha Beta › 2-Layer Sandwich › Aconitase; domain 3 › Aconitase, domain 3 | 0.52 | 46.0 | 3.77e-01 | 100.0% | 74.3% |
| 1xdpA03 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.52 | 45.0 | 3.66e-01 | 100.0% | 56.9% |
| 2d4aD01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 45.0 | 3.91e-01 | 100.0% | 99.3% |
| 2wvlB00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.50 | 43.0 | 2.94e-01 | 100.0% | 33.5% |
| 2bo4A01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.50 | 42.0 | 3.47e-01 | 98.9% | 58.9% |
ECOD (66)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 9908 | 2006.1.1.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 | 0.95 | 91.0 | 8.05e-01 | 100.0% | 83.9% |
| 4992093 | 2006.1.1.43 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_PNKP | 0.87 | 80.0 | 6.61e-01 | 96.7% | 93.3% |
| 4972563 | 2006.1.1.43 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_PNKP | 0.85 | 81.0 | 6.47e-01 | 100.0% | 98.8% |
| 4956037 | 2006.1.1.6 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_phosphat_B | 0.84 | 78.0 | 6.33e-01 | 98.9% | 95.6% |
| 4389728 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.79 | 73.0 | 5.64e-01 | 100.0% | 95.4% |
| 5073536 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.79 | 73.0 | 5.40e-01 | 100.0% | 91.5% |
| 4994524 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.79 | 73.0 | 5.35e-01 | 100.0% | 91.6% |
| 5079773 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.79 | 73.0 | 5.39e-01 | 100.0% | 94.1% |
| 3975494 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.78 | 72.0 | 5.54e-01 | 100.0% | 98.5% |
| 5057911 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.77 | 72.0 | 6.17e-01 | 100.0% | 92.1% |
| 4999216 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.76 | 70.0 | 5.20e-01 | 100.0% | 91.6% |
| 3611193 | 2006.1.1.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF | 0.76 | 69.0 | 5.08e-01 | 100.0% | 82.1% |
| 3716658 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.76 | 69.0 | 5.16e-01 | 100.0% | 89.1% |
| 4508118 | 2006.1.1.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 | 0.68 | 63.0 | 4.67e-01 | 100.0% | 96.8% |
| None | — | 0.68 | 52.0 | 3.67e-01 | 84.8% | 26.0% | |
| 5037891 | 2002.1.1.112 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_114 | 0.65 | 52.0 | 3.67e-01 | 85.9% | 28.8% |
| 5029904 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.64 | 48.0 | 4.12e-01 | 80.4% | 49.3% |
| 4025795 | 2008.1.1.86 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP | 0.63 | 41.0 | 3.63e-01 | 81.5% | 46.9% |
| 4936106 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.63 | 45.0 | 3.44e-01 | 85.9% | 31.7% |
| 3404547 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.62 | 46.0 | 3.49e-01 | 84.8% | 32.0% |
| 3386860 | 7512.1.1.16 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Capsule_synth | 0.61 | 54.0 | 3.60e-01 | 100.0% | 35.2% |
| 5037052 | 7512.1.1.8 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Epimerase_2 | 0.61 | 55.0 | 4.28e-01 | 100.0% | 85.1% |
| 5059592 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.61 | 54.0 | 4.81e-01 | 98.9% | 90.8% |
| 3511998 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.60 | 46.0 | 3.67e-01 | 81.5% | 91.4% |
| 3932820 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.60 | 45.0 | 3.47e-01 | 85.9% | 34.1% |
| 3608009 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.60 | 43.0 | 3.41e-01 | 85.9% | 35.5% |
| 4430285 | 7516.1.1.5 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › IspD | 0.59 | 53.0 | 3.99e-01 | 100.0% | 88.3% |
| 3212947 | 7516.1.1.1 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase | 0.59 | 51.0 | 3.69e-01 | 100.0% | 71.2% |
| 4611545 | 2005.1.1.11 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 | 0.59 | 52.0 | 3.94e-01 | 100.0% | 62.6% |
| 4554472 | 2004.1.1.100 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NTPase_1 | 0.58 | 45.0 | 3.72e-01 | 83.7% | 68.2% |
| 4939266 | 2002.1.1.52 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Peptidase_U32 | 0.58 | 51.0 | 3.49e-01 | 100.0% | 66.4% |
| 2034290 | 2005.1.1.8 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Arginosuc_synth | 0.58 | 52.0 | 4.08e-01 | 100.0% | 76.0% |
| 4164996 | 7516.1.1.5 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › IspD | 0.57 | 50.0 | 3.82e-01 | 100.0% | 91.7% |
| 3972387 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.57 | 51.0 | 3.91e-01 | 100.0% | 59.1% |
| 4645738 | 2003.1.1.48 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › YjeF_N | 0.57 | 51.0 | 3.87e-01 | 100.0% | 58.9% |
| None | — | 0.57 | 51.0 | 4.08e-01 | 100.0% | 78.9% | |
| 5048981 | 7590.1.1.0 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs | 0.57 | 44.0 | 3.42e-01 | 83.7% | 67.6% |
| 3739670 | 2007.2.5.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase | 0.56 | 44.0 | 4.14e-01 | 85.9% | 83.5% |
| 3937876 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.56 | 49.0 | 3.69e-01 | 100.0% | 86.1% |
| 4664756 | 2003.1.1.48 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › YjeF_N | 0.56 | 50.0 | 3.85e-01 | 100.0% | 62.4% |
| 3172513 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.56 | 48.0 | 4.06e-01 | 100.0% | 88.2% |
| 3319917 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.56 | 50.0 | 3.63e-01 | 100.0% | 91.9% |
| 5044706 | 2006.1.4.9 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › RNase_Zc3h12a | 0.56 | 50.0 | 4.40e-01 | 100.0% | 90.4% |
| 5016836 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.56 | 50.0 | 3.88e-01 | 100.0% | 60.0% |
| 4242923 | 7510.1.1.3 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › FA_synthesis | 0.56 | 49.0 | 4.11e-01 | 100.0% | 91.3% |
| 3598934 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.55 | 49.0 | 3.72e-01 | 100.0% | 58.7% |
| 3196283 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.55 | 48.0 | 3.76e-01 | 100.0% | 89.5% |
| 5026586 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.54 | 48.0 | 4.10e-01 | 100.0% | 76.1% |
| 3194671 | 7516.1.1.99 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › DUF5672 | 0.54 | 48.0 | 3.55e-01 | 100.0% | 82.0% |
| 3482770 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.54 | 47.0 | 3.47e-01 | 98.9% | 41.5% |
| 3968146 | 2004.1.1.196 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 | 0.54 | 41.0 | 3.32e-01 | 82.6% | 54.2% |
| 3473553 | 300.1.1.1 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc | 0.54 | 47.0 | 3.62e-01 | 100.0% | 56.1% |
| 3368671 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.54 | 40.0 | 3.18e-01 | 83.7% | 35.7% |
| 5025353 | 2002.1.1.15 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Trp_syntA | 0.54 | 45.0 | 3.47e-01 | 93.5% | 66.0% |
| 4403046 | 2005.1.1.11 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 | 0.53 | 46.0 | 3.64e-01 | 100.0% | 67.1% |
| 3272832 | 300.1.1.1 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc | 0.53 | 47.0 | 3.63e-01 | 98.9% | 53.8% |
| 3593921 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 44.0 | 3.56e-01 | 93.5% | 84.3% |
| 4279415 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.53 | 41.0 | 2.69e-01 | 83.7% | 66.3% |
| 141623 | 7516.1.1.11 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CTP_transf_3 | 0.52 | 46.0 | 3.41e-01 | 100.0% | 90.5% |
| 4296289 | 2005.1.1.11 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 | 0.52 | 45.0 | 3.53e-01 | 98.9% | 66.3% |
| 4370385 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.51 | 45.0 | 4.16e-01 | 98.9% | 93.3% |
| 411928 | 7516.1.1.30 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › MGS_C,MGS_GT | 0.51 | 44.0 | 3.01e-01 | 100.0% | 56.5% |
| 4947077 | 2004.1.1.1203 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RMMBL | 0.51 | 40.0 | 3.25e-01 | 84.8% | 77.7% |
| 4481395 | 7516.1.1.30 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › MGS_C,MGS_GT | 0.51 | 45.0 | 2.95e-01 | 98.9% | 54.9% |
| 7904 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.50 | 42.0 | 3.12e-01 | 96.7% | 92.3% |
| 4076872 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.50 | 43.0 | 2.98e-01 | 98.9% | 95.6% |
D2
high
residues 105-193
Domain cluster:
rep: NC_031927.1__YP_009323018.1__BOW86_gp085__00085__D3-79
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01541.31 best | GIY-YIG | 36.3 | 7.80e-09 | 96.6% | 91.0% |