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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00058
Bact-VirSR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00058
Identity
- Kingdom:
- phage
Quality
83.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-78
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ohgA02 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.69 | 58.0 | 5.22e-01 | 92.1% | 78.1% |
| 1yueA03 | 3.30.2320.40 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › | 0.69 | 62.0 | 5.29e-01 | 100.0% | 79.3% |
| 3bqwA02 | 3.30.1930.10 | Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain | 0.67 | 60.0 | 4.94e-01 | 100.0% | 81.8% |
| 2kinA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.64 | 49.0 | 3.48e-01 | 84.2% | 76.5% |
| 3agkA03 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.63 | 50.0 | 4.70e-01 | 88.2% | 71.0% |
| 4qarA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.62 | 44.0 | 3.28e-01 | 73.7% | 77.9% |
| 5zb8A01 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.61 | 53.0 | 3.77e-01 | 97.4% | 94.1% |
| 2pk8A00 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.60 | 52.0 | 4.92e-01 | 97.4% | 90.4% |
| 3f4lA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.59 | 49.0 | 3.69e-01 | 98.7% | 53.8% |
| 2h29A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.58 | 46.0 | 3.48e-01 | 86.8% | 60.6% |
| 1vm6A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.57 | 48.0 | 4.74e-01 | 94.7% | 89.2% |
| 1uqtA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.57 | 50.0 | 3.50e-01 | 97.4% | 35.8% |
| 2aizP01 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.57 | 47.0 | 4.22e-01 | 93.4% | 87.2% |
| 1smrA02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.56 | 46.0 | 3.67e-01 | 90.8% | 74.2% |
| 1f3lA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 48.0 | 3.93e-01 | 96.1% | 88.8% |
| 3fseA01 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.56 | 48.0 | 3.64e-01 | 100.0% | 47.2% |
| 1h0hA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.56 | 48.0 | 3.64e-01 | 94.7% | 75.6% |
| 1q16A13 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.55 | 47.0 | 3.70e-01 | 92.1% | 76.7% |
| 7bexA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 45.0 | 3.64e-01 | 93.4% | 65.8% |
| 2iv2X04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.55 | 46.0 | 4.18e-01 | 90.8% | 86.9% |
| 1ti2A04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.54 | 46.0 | 3.64e-01 | 93.4% | 73.5% |
| 5n70A02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.54 | 44.0 | 3.50e-01 | 90.8% | 75.8% |
| 1uh9A02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.54 | 45.0 | 3.64e-01 | 93.4% | 73.2% |
| 1dmrA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.53 | 45.0 | 3.56e-01 | 94.7% | 65.6% |
| 7nz1G01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.53 | 44.0 | 4.08e-01 | 89.5% | 86.5% |
| 1wz2A04 | 3.30.2320.20 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › Class I aminoacyl-tRNA synthetases (RS) | 0.53 | 43.0 | 4.18e-01 | 97.4% | 97.7% |
| 2napA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.52 | 43.0 | 3.74e-01 | 89.5% | 75.4% |
| 6cz7C02 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.52 | 43.0 | 3.55e-01 | 89.5% | 82.6% |
| 1pf5A00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.52 | 43.0 | 3.74e-01 | 98.7% | 63.1% |
| 4qttB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 44.0 | 3.48e-01 | 100.0% | 98.3% |
| 4fzvA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 42.0 | 3.06e-01 | 92.1% | 64.2% |
| 5eupA00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.51 | 33.0 | 2.91e-01 | 77.6% | 40.8% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4125320 | 298.4.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH | 0.74 | 60.0 | 5.82e-01 | 98.7% | 78.8% |
| 4313471 | 2485.3.1.11 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like | 0.73 | 64.0 | 4.26e-01 | 97.4% | 30.0% |
| 4097188 | 298.4.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH | 0.69 | 58.0 | 5.11e-01 | 100.0% | 63.6% |
| 2899245 | 2485.3.1.10 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 | 0.68 | 61.0 | 3.95e-01 | 100.0% | 38.0% |
| 2894407 | 298.4.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E | 0.66 | 51.0 | 4.37e-01 | 100.0% | 50.8% |
| 2639625 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.65 | 55.0 | 3.78e-01 | 94.7% | 30.4% |
| 4674415 | 2011.2.1.6 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › tRNA_deacylase | 0.64 | 44.0 | 3.40e-01 | 72.4% | 80.0% |
| 4427004 | 2011.2.1.6 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › tRNA_deacylase | 0.63 | 45.0 | 3.41e-01 | 75.0% | 80.6% |
| 2417750 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.61 | 53.0 | 3.74e-01 | 97.4% | 91.1% |
| 11367 | 2485.3.1.6 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › ENCP4 | 0.60 | 52.0 | 4.92e-01 | 97.4% | 90.4% |
| 4446061 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.57 | 46.0 | 4.57e-01 | 88.2% | 81.2% |
| 4470898 | 2003.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Gp_dh_N | 0.57 | 46.0 | 3.43e-01 | 93.4% | 76.4% |
| 4967336 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.57 | 44.0 | 3.91e-01 | 85.5% | 89.6% |
| 4995426 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.56 | 46.0 | 4.12e-01 | 94.7% | 62.7% |
| 4508213 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.56 | 48.0 | 4.05e-01 | 93.4% | 69.6% |
| 3879529 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.56 | 46.0 | 2.98e-01 | 93.4% | 32.0% |
| 4961752 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.56 | 48.0 | 3.72e-01 | 93.4% | 54.4% |
| 5008361 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.55 | 48.0 | 3.86e-01 | 94.7% | 65.5% |
| 3980893 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.55 | 47.0 | 3.88e-01 | 94.7% | 74.6% |
| 4241168 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.55 | 45.0 | 4.49e-01 | 89.5% | 85.0% |
| 4263053 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.55 | 45.0 | 4.33e-01 | 88.2% | 83.5% |
| 4981335 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.55 | 45.0 | 4.35e-01 | 89.5% | 82.4% |
| 4939451 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.54 | 44.0 | 4.22e-01 | 86.8% | 88.6% |
| 4683136 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.54 | 46.0 | 3.88e-01 | 94.7% | 62.3% |
| 3773238 | 1.1.1.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease | 0.54 | 44.0 | 3.72e-01 | 89.5% | 73.8% |
| 4932036 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.54 | 47.0 | 3.62e-01 | 94.7% | 72.7% |
| 3959718 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.54 | 46.0 | 4.02e-01 | 93.4% | 87.8% |
| 3839907 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.54 | 46.0 | 3.63e-01 | 94.7% | 67.5% |
| 4885884 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.54 | 45.0 | 3.81e-01 | 90.8% | 66.4% |
| 5013618 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.54 | 46.0 | 3.85e-01 | 93.4% | 67.7% |
| 4977837 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.54 | 44.0 | 4.31e-01 | 89.5% | 83.5% |
| 3286603 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.54 | 47.0 | 3.80e-01 | 94.7% | 62.9% |
| 4943394 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.54 | 46.0 | 3.95e-01 | 94.7% | 74.8% |
| 3591362 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.54 | 44.0 | 3.92e-01 | 88.2% | 65.7% |
| 5043151 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.54 | 42.0 | 4.19e-01 | 89.5% | 80.0% |
| 2968642 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.54 | 46.0 | 3.94e-01 | 94.7% | 72.1% |
| 4102554 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.53 | 47.0 | 4.16e-01 | 94.7% | 82.9% |
| 3706161 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.53 | 44.0 | 4.28e-01 | 97.4% | 80.0% |
| 1322884 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.53 | 44.0 | 3.15e-01 | 93.4% | 49.4% |
| 4171290 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.53 | 44.0 | 4.28e-01 | 93.4% | 80.0% |
| 4239165 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.53 | 45.0 | 3.67e-01 | 93.4% | 60.0% |
| 4978117 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.53 | 45.0 | 3.94e-01 | 93.4% | 70.2% |
| 4444379 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.53 | 46.0 | 3.61e-01 | 94.7% | 64.5% |
| 5037727 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.53 | 43.0 | 4.13e-01 | 88.2% | 80.0% |
| 3649494 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.53 | 44.0 | 2.82e-01 | 93.4% | 31.1% |
| 4108919 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.53 | 43.0 | 4.20e-01 | 89.5% | 80.0% |
| 1878379 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.53 | 44.0 | 3.53e-01 | 89.5% | 64.1% |
| 3967671 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.52 | 45.0 | 4.07e-01 | 94.7% | 83.8% |
| 5019509 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.52 | 44.0 | 3.73e-01 | 92.1% | 67.2% |
| 3839859 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.52 | 43.0 | 4.16e-01 | 89.5% | 91.8% |
| 4145445 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.52 | 44.0 | 4.00e-01 | 94.7% | 84.8% |
| 4978464 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.52 | 44.0 | 3.84e-01 | 93.4% | 73.9% |
| 3505058 | 2007.1.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › DJ-1_PfpI | 0.51 | 43.0 | 3.29e-01 | 94.7% | 51.1% |
| 4299573 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.51 | 44.0 | 3.92e-01 | 94.7% | 81.0% |
| 4433089 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.50 | 43.0 | 3.87e-01 | 94.7% | 82.9% |