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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00068
Bact-VirSR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00068
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 261-284_309-482_569-697_711-730
Domain cluster:
rep: IMGVR_UViG_3300023178_003052-3300023178-Ga0255759_100081211__D253-472_1365-1486
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3uxfA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 23.0 | 3.62e-01 | 76.9% | 93.0% |
| 2raqA01 | 3.30.70.1340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain | 0.52 | 13.0 | 2.70e-01 | 81.0% | 82.4% |
| 5w1dA02 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.51 | 17.0 | 3.17e-01 | 96.0% | 98.1% |
D2
medium
residues 1-62_155-170_233-257
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5u1xA02 | 2.60.490.10 | Mainly Beta › Sandwich › atp-gated p2x4 ion channel fold › atp-gated p2x4 ion channel domain | 0.58 | 50.0 | 3.72e-01 | 97.1% | 95.6% |
| 5f1cA02 | 2.60.490.10 | Mainly Beta › Sandwich › atp-gated p2x4 ion channel fold › atp-gated p2x4 ion channel domain | 0.58 | 45.0 | 3.32e-01 | 84.5% | 99.3% |
| 4qtcA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.53 | 37.0 | 3.10e-01 | 73.8% | 73.3% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3478674 | 3483.1.1.1 ↗ | beta sandwiches › P2X purinoceptor › P2X purinoceptor › P2X purinoceptor › P2X_receptor | 0.60 | 49.0 | 3.32e-01 | 89.3% | 70.3% |
| 3376331 | 10.35.1.2 ↗ | beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain › COPIIcoated_ERV | 0.58 | 52.0 | 4.26e-01 | 100.0% | 75.3% |
| 3264582 | 10.35.1.1 ↗ | beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain › COPIIcoated_ERV,ERGIC_N | 0.57 | 51.0 | 3.87e-01 | 100.0% | 77.6% |
| 3520985 | 10.35.1.2 ↗ | beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain › COPIIcoated_ERV | 0.57 | 50.0 | 4.09e-01 | 100.0% | 67.5% |
| 3219263 | 10.35.1.2 ↗ | beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain › COPIIcoated_ERV | 0.57 | 50.0 | 3.82e-01 | 100.0% | 75.7% |
| 3595596 | 10.35.1.1 ↗ | beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain › COPIIcoated_ERV,ERGIC_N | 0.57 | 50.0 | 4.05e-01 | 100.0% | 71.2% |
| 3751253 | 10.35.1.1 ↗ | beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain › COPIIcoated_ERV,ERGIC_N | 0.56 | 49.0 | 4.11e-01 | 100.0% | 71.1% |
| 4433784 | 11.1.4.49 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF2846 | 0.55 | 40.0 | 3.84e-01 | 90.3% | 65.5% |
| 4014189 | 10.35.1.0 ↗ | beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain | 0.55 | 47.0 | 3.64e-01 | 100.0% | 75.4% |
| 3939503 | 10.35.1.1 ↗ | beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain › COPIIcoated_ERV,ERGIC_N | 0.52 | 46.0 | 3.43e-01 | 100.0% | 79.6% |
D3
medium
residues 63-154_171-232
Domain cluster:
rep: IMGVR_UViG_3300023178_003052-3300023178-Ga0255759_100081211__D71-152_169-219
D4
medium
residues 285-308_483-568_698-710
Domain cluster:
representative