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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00110
Bact-VirSR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00110
Identity
- Kingdom:
- phage
Quality
59.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 328-430
Domain cluster:
rep: ON755184.1__UVF61518.1__SEA_DALANDE_105__00105__D152-256
D2
high
residues 661-754
Domain cluster:
rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6o38A04 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.77 | 66.0 | 6.75e-01 | 100.0% | 96.6% |
| 6o38A03 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 61.0 | 6.45e-01 | 94.7% | 98.8% |
| 6o38A01 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 66.0 | 6.72e-01 | 98.9% | 98.9% |
| 6o38A02 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 66.0 | 6.66e-01 | 100.0% | 100.0% |
| 4dnyA00 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.71 | 65.0 | 6.21e-01 | 100.0% | 87.2% |
| 1hf2A02 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.62 | 48.0 | 4.66e-01 | 100.0% | 75.5% |
| 4knuA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.62 | 47.0 | 3.92e-01 | 79.8% | 74.2% |
| 1kdjA00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.59 | 43.0 | 4.25e-01 | 76.6% | 81.4% |
| 2qm3A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 42.0 | 3.21e-01 | 90.4% | 76.1% |
| 2z4tA01 | 2.60.40.3010 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 34.0 | 3.47e-01 | 90.4% | 70.7% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2581339 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.76 | 68.0 | 6.80e-01 | 100.0% | 96.8% |
| 2581337 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.75 | 66.0 | 6.70e-01 | 98.9% | 97.8% |
| 4063416 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.68 | 48.0 | 4.33e-01 | 74.5% | 72.3% |
| 4929501 | 3156.1.1.13 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cupredoxin_1 | 0.61 | 46.0 | 4.46e-01 | 79.8% | 74.3% |
| 4167472 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.61 | 44.0 | 3.08e-01 | 76.6% | 44.1% |
| 4509161 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.59 | 44.0 | 3.09e-01 | 80.9% | 40.2% |
| 4663567 | 207.6.1.12 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › Ice_nucleation | 0.56 | 44.0 | 2.73e-01 | 100.0% | 13.5% |
| 3651307 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.53 | 41.0 | 3.82e-01 | 80.9% | 87.8% |
| 5040373 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 34.0 | 3.84e-01 | 98.9% | 90.0% |
| 3462303 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.52 | 41.0 | 3.17e-01 | 84.0% | 48.3% |
D3
medium
residues 44-185
D4
medium
residues 440-515
D5
medium
residues 547-594