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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00141
Bact-VirSR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00141
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-140
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.67 | 30.0 | 4.33e-01 | 76.6% | 94.6% |
| 1bxwA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.62 | 54.0 | 4.89e-01 | 96.1% | 93.0% |
| 2obdA02 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.60 | 52.0 | 4.61e-01 | 96.1% | 85.7% |
| 1bp1A01 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.59 | 52.0 | 4.65e-01 | 96.1% | 88.3% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 31.0 | 3.84e-01 | 86.7% | 85.5% |
| 1qr4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 27.0 | 3.16e-01 | 88.3% | 69.0% |
| 3w1eA02 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.51 | 42.0 | 3.84e-01 | 89.8% | 84.2% |
| 3cxeC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 29.0 | 3.23e-01 | 87.5% | 68.4% |
| 1idpA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 42.0 | 4.09e-01 | 92.2% | 94.6% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4241745 | 883.1.1.8 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Grp7_allergen | 0.63 | 49.0 | 4.34e-01 | 82.8% | 62.1% |
| 4011180 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.58 | 36.0 | 3.44e-01 | 84.4% | 52.0% |
| 3651562 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.57 | 42.0 | 3.92e-01 | 76.6% | 89.1% |
| 3512503 | 883.1.1.22 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › PF26547 | 0.57 | 44.0 | 4.00e-01 | 82.0% | 67.4% |
| 4593105 | 243.1.1.3 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Scytalone_dh | 0.57 | 36.0 | 3.65e-01 | 79.7% | 62.4% |
| 3575522 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.56 | 48.0 | 4.21e-01 | 96.1% | 77.6% |
| 3269706 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 35.0 | 4.30e-01 | 78.9% | 98.8% |
| 3504130 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 40.0 | 4.25e-01 | 85.9% | 84.3% |
| 3764790 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.55 | 38.0 | 4.27e-01 | 85.9% | 95.8% |
| 3847303 | 5084.5.1.67 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Hobbit | 0.55 | 36.0 | 3.15e-01 | 70.3% | 43.7% |
| 3514245 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.54 | 41.0 | 4.29e-01 | 90.6% | 89.6% |
| 3901207 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.53 | 39.0 | 4.23e-01 | 91.4% | 95.1% |
| 3182995 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.53 | 33.0 | 3.38e-01 | 79.7% | 64.2% |
| 3628460 | 3308.1.1.0 ↗ | beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › periplasmic lysozyme inhibitor of I-type lysozyme › periplasmic lysozyme inhibitor of I-type lysozyme | 0.52 | 30.0 | 3.63e-01 | 83.6% | 91.3% |
| 3801065 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.51 | 45.0 | 3.66e-01 | 100.0% | 78.5% |
| 4542150 | 243.1.1.44 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MBA1 | 0.50 | 41.0 | 3.59e-01 | 90.6% | 70.2% |