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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00168
Bact-VirSR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00168
Identity
- Kingdom:
- phage
Quality
65.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-105
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tqmA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.77 | 54.0 | 5.56e-01 | 71.9% | 96.7% |
| 2n8xA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.74 | 53.0 | 4.34e-01 | 74.0% | 69.3% |
| 2rqlA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.73 | 52.0 | 5.23e-01 | 72.9% | 92.6% |
| 2dixA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.70 | 48.0 | 5.26e-01 | 70.8% | 88.5% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.70 | 48.0 | 5.51e-01 | 71.9% | 97.2% |
| 4gn2A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.70 | 49.0 | 3.68e-01 | 74.0% | 67.5% |
| 2nugB02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.68 | 47.0 | 5.34e-01 | 70.8% | 95.8% |
| 1imuA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.68 | 50.0 | 4.88e-01 | 77.1% | 86.0% |
| 2l33A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.66 | 47.0 | 4.87e-01 | 93.8% | 79.1% |
| 3mwcA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.65 | 51.0 | 4.63e-01 | 86.5% | 80.7% |
| 3cyjA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.64 | 50.0 | 4.69e-01 | 86.5% | 86.9% |
| 5aj3E01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.63 | 49.0 | 5.33e-01 | 92.7% | 98.8% |
| 1uhzA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.63 | 47.0 | 4.86e-01 | 81.2% | 85.4% |
| 3gd6A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.62 | 50.0 | 4.38e-01 | 86.5% | 93.7% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 47.0 | 4.59e-01 | 82.3% | 81.0% |
| 7f79A01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.60 | 53.0 | 4.38e-01 | 96.9% | 85.5% |
| 4k7rA02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.59 | 39.0 | 4.35e-01 | 83.3% | 84.4% |
| 2pgeA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.59 | 47.0 | 4.37e-01 | 87.5% | 100.0% |
| 1cbyA00 | 3.40.198.10 | Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like | 0.59 | 42.0 | 3.23e-01 | 75.0% | 73.6% |
| 1r0mA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.58 | 45.0 | 4.17e-01 | 85.4% | 73.8% |
| 2dmyA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 50.0 | 5.07e-01 | 99.0% | 92.8% |
| 1jpdX01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.58 | 45.0 | 4.48e-01 | 85.4% | 92.9% |
| 1fm2B03 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.56 | 34.0 | 3.94e-01 | 88.5% | 89.4% |
| 1vl4A01 | 3.30.2290.10 | Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily | 0.55 | 44.0 | 3.50e-01 | 94.8% | 41.5% |
| 8aa9A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 40.0 | 3.81e-01 | 94.8% | 64.9% |
| 2ebkA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.54 | 44.0 | 4.01e-01 | 95.8% | 66.4% |
| 1xteA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 42.0 | 3.98e-01 | 85.4% | 92.2% |
| 4wksC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.54 | 35.0 | 3.85e-01 | 91.7% | 84.0% |
| 6nvxB02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.53 | 35.0 | 3.82e-01 | 90.6% | 83.1% |
| 3jv1A00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.53 | 42.0 | 3.40e-01 | 100.0% | 44.5% |
| 2kigA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.53 | 48.0 | 4.02e-01 | 100.0% | 88.2% |
| 7xr9E01 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 40.0 | 3.20e-01 | 85.4% | 51.3% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3390564 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.79 | 51.0 | 4.99e-01 | 79.2% | 61.0% |
| 3510700 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.75 | 52.0 | 5.16e-01 | 71.9% | 76.0% |
| 3492440 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.75 | 51.0 | 4.67e-01 | 70.8% | 56.8% |
| 3596829 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.74 | 54.0 | 5.06e-01 | 75.0% | 80.0% |
| 3771653 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.73 | 50.0 | 4.92e-01 | 70.8% | 70.5% |
| 3619264 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.73 | 51.0 | 5.30e-01 | 71.9% | 77.8% |
| 3481273 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.73 | 51.0 | 4.95e-01 | 71.9% | 69.5% |
| 3797649 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.73 | 57.0 | 5.41e-01 | 81.2% | 74.5% |
| 3911301 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.72 | 50.0 | 5.33e-01 | 82.3% | 81.2% |
| 3514659 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.72 | 51.0 | 5.01e-01 | 81.2% | 70.0% |
| 3408941 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.71 | 49.0 | 5.28e-01 | 70.8% | 86.3% |
| 3408974 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.71 | 49.0 | 4.93e-01 | 70.8% | 73.7% |
| 3991383 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.71 | 51.0 | 5.29e-01 | 84.4% | 80.0% |
| 5023931 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.70 | 45.0 | 5.21e-01 | 82.3% | 90.0% |
| 4567415 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.70 | 52.0 | 5.14e-01 | 94.8% | 75.0% |
| 3505249 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.69 | 48.0 | 4.95e-01 | 71.9% | 77.8% |
| 3517888 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.69 | 49.0 | 5.10e-01 | 75.0% | 80.0% |
| 3243587 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.67 | 36.0 | 2.47e-01 | 94.8% | 15.9% |
| 3508799 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.67 | 49.0 | 5.31e-01 | 90.6% | 91.3% |
| 3510694 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.66 | 51.0 | 5.13e-01 | 82.3% | 93.7% |
| 3505248 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.65 | 51.0 | 5.12e-01 | 84.4% | 92.0% |
| 3282815 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.65 | 54.0 | 5.32e-01 | 87.5% | 93.0% |
| 3503377 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.65 | 51.0 | 5.00e-01 | 84.4% | 82.9% |
| 146717 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.65 | 49.0 | 4.93e-01 | 94.8% | 78.6% |
| 3226910 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.64 | 35.0 | 2.64e-01 | 94.8% | 22.7% |
| 5809 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.63 | 47.0 | 4.86e-01 | 81.2% | 85.4% |
| 4026643 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.62 | 49.0 | 5.23e-01 | 83.3% | 95.3% |
| 4927926 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.61 | 44.0 | 4.31e-01 | 94.8% | 68.3% |
| 3887511 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.61 | 50.0 | 4.94e-01 | 94.8% | 84.0% |
| 5070307 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.60 | 42.0 | 4.69e-01 | 94.8% | 93.3% |
| 1890003 | 274.1.1.18 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › Tt1219-like | 0.58 | 39.0 | 3.03e-01 | 96.9% | 32.5% |
| 3700773 | 7520.1.1.0 ↗ | a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like | 0.58 | 50.0 | 4.08e-01 | 94.8% | 85.0% |
| 5050811 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.58 | 43.0 | 2.85e-01 | 77.1% | 28.9% |
| 4984962 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.58 | 43.0 | 2.98e-01 | 76.0% | 36.7% |
| 5844 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.58 | 46.0 | 4.33e-01 | 86.5% | 88.0% |
| 5080382 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.57 | 47.0 | 3.67e-01 | 94.8% | 40.9% |
| 4936010 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.57 | 44.0 | 3.08e-01 | 84.4% | 90.3% |
| 3706903 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.56 | 41.0 | 3.58e-01 | 79.2% | 88.2% |
| 4927936 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 40.0 | 4.27e-01 | 94.8% | 85.9% |
| 4964487 | 218.1.1.12 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › PF26684 | 0.55 | 43.0 | 4.17e-01 | 87.5% | 91.8% |
| 3386302 | 3186.1.1.1 ↗ | a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK › Flg_hook | 0.54 | 34.0 | 3.65e-01 | 91.7% | 72.9% |
| 3214793 | 5.1.4.166 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_DCAF4 | 0.53 | 42.0 | 2.80e-01 | 86.5% | 24.6% |
| 3400954 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.52 | 47.0 | 3.22e-01 | 99.0% | 38.1% |