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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00169

Bact-Vir

SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00169

Identity

Kingdom:
phage

Quality

80.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-83
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2y8tA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.70 33.0 3.95e-01 88.7% 65.5%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.70 32.0 3.76e-01 90.0% 58.9%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.69 37.0 4.33e-01 86.3% 74.5%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 35.0 3.82e-01 96.2% 59.1%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.65 38.0 3.70e-01 100.0% 52.2%
2p3wB01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 31.0 2.94e-01 88.7% 46.9%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.54 36.0 3.24e-01 100.0% 49.6%
1d1lA00 3.30.240.10 Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor 0.53 32.0 3.60e-01 97.5% 80.3%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.52 40.0 4.18e-01 97.5% 87.8%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4293536 4232.1.1.0 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 0.76 40.0 4.89e-01 85.0% 82.0%
4971094 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.65 37.0 3.16e-01 100.0% 33.3%
5046464 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.64 35.0 3.12e-01 100.0% 39.1%
5011439 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.62 36.0 3.02e-01 100.0% 31.7%
5075212 802.1.1.1 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.59 34.0 3.33e-01 100.0% 48.9%
4931303 802.1.1.1 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.59 34.0 3.36e-01 100.0% 51.8%
4957226 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.55 36.0 3.28e-01 97.5% 53.0%
4212763 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.54 32.0 3.19e-01 87.5% 57.6%
3933306 5001.1.1.44 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.53 36.0 2.62e-01 70.0% 55.8%
4347799 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.53 35.0 3.66e-01 97.5% 73.3%
3354230 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.52 37.0 3.39e-01 97.5% 58.3%
3811308 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.51 37.0 3.46e-01 97.5% 63.2%
3535221 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.51 37.0 3.43e-01 97.5% 61.0%
4886306 4070.1.1.7 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › PDZ_6 0.51 37.0 3.58e-01 97.5% 67.8%
3629768 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.51 37.0 3.58e-01 97.5% 67.8%