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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00171
Bact-VirSR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00171
Identity
- Kingdom:
- phage
Quality
91.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-65
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n6rA03 | 3.30.700.30 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › | 0.75 | 42.0 | 3.28e-01 | 100.0% | 26.3% |
| 2vrsA03 | 2.60.90.40 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.64 | 57.0 | 4.48e-01 | 100.0% | 93.2% |
| 2zkmX01 | 2.30.29.240 | Mainly Beta › Roll › PH-domain like › | 0.63 | 44.0 | 3.07e-01 | 73.4% | 46.1% |
| 4hdoA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 45.0 | 3.96e-01 | 75.0% | 72.8% |
| 2k2jA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 45.0 | 3.72e-01 | 100.0% | 41.9% |
| 7t8tA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 43.0 | 3.40e-01 | 73.4% | 68.7% |
| 4qrlA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.60 | 47.0 | 3.93e-01 | 100.0% | 50.0% |
| 2rrfA00 | 2.30.29.160 | Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal | 0.59 | 43.0 | 3.34e-01 | 78.1% | 56.0% |
| 2xzlA02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.57 | 41.0 | 3.81e-01 | 78.1% | 62.0% |
| 3zpeA00 | 2.60.90.50 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.56 | 48.0 | 3.84e-01 | 100.0% | 97.1% |
| 7lt2A01 | 3.30.460.90 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.55 | 34.0 | 2.37e-01 | 98.4% | 15.9% |
| 2w5eA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 47.0 | 4.49e-01 | 100.0% | 85.1% |
| 1a1xA00 | 2.40.15.10 | Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 | 0.53 | 43.0 | 3.82e-01 | 96.9% | 80.2% |
| 3lxuX02 | 2.20.25.690 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.52 | 34.0 | 3.36e-01 | 100.0% | 61.1% |
| 6lf2B01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 41.0 | 3.43e-01 | 93.8% | 83.9% |
| 3cpxA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.50 | 30.0 | 3.09e-01 | 78.1% | 58.1% |
| 3zx7A02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.50 | 41.0 | 3.31e-01 | 95.3% | 84.7% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3998402 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.71 | 43.0 | 3.80e-01 | 100.0% | 41.5% |
| 3295296 | 4.8.1.7 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SAWADEE | 0.70 | 43.0 | 4.95e-01 | 100.0% | 88.9% |
| 3622643 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.69 | 41.0 | 3.75e-01 | 100.0% | 44.7% |
| 3791839 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.68 | 41.0 | 3.80e-01 | 100.0% | 47.5% |
| 3594326 | 241.10.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain | 0.67 | 41.0 | 3.79e-01 | 100.0% | 48.8% |
| 3933782 | 4184.1.1.0 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat | 0.66 | 41.0 | 3.78e-01 | 100.0% | 48.2% |
| 3388697 | 4184.1.1.0 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat | 0.63 | 37.0 | 3.45e-01 | 100.0% | 45.0% |
| 3562938 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.62 | 43.0 | 3.49e-01 | 73.4% | 56.8% |
| 3411132 | 4184.1.1.1 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 | 0.62 | 36.0 | 3.33e-01 | 100.0% | 45.0% |
| 3614205 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 43.0 | 3.33e-01 | 73.4% | 62.9% |
| 3669786 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.61 | 39.0 | 4.27e-01 | 100.0% | 84.0% |
| 4988502 | 375.1.1.298 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_HMPTM | 0.60 | 38.0 | 4.30e-01 | 100.0% | 91.1% |
| 5079197 | 375.1.1.298 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_HMPTM | 0.60 | 38.0 | 4.16e-01 | 100.0% | 82.0% |
| 3490216 | 220.1.1.36 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 | 0.59 | 43.0 | 3.48e-01 | 78.1% | 67.2% |
| 3467267 | 4.1.1.94 ↗ | beta barrels › SH3 › SH3 › SH3 › SAWADEE | 0.59 | 37.0 | 3.70e-01 | 100.0% | 61.5% |
| 5039063 | 375.1.4.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C | 0.56 | 39.0 | 4.38e-01 | 98.4% | 94.0% |
| 3818081 | 1.1.11.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 | 0.56 | 40.0 | 3.28e-01 | 76.6% | 51.7% |
| 4816291 | 316.1.1.6 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Mab-21 | 0.55 | 34.0 | 2.36e-01 | 98.4% | 15.6% |
| 3606615 | 241.10.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain | 0.54 | 42.0 | 3.80e-01 | 90.6% | 61.1% |
| 4405204 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.53 | 46.0 | 4.32e-01 | 98.4% | 81.2% |
| 3905063 | 268.1.1.1 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 | 0.53 | 36.0 | 3.49e-01 | 71.9% | 65.3% |
| 3342224 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 36.0 | 2.84e-01 | 73.4% | 64.5% |
| 4994580 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.53 | 37.0 | 2.25e-01 | 75.0% | 83.3% |
| 3480240 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 42.0 | 2.99e-01 | 100.0% | 49.6% |
| 3957000 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.51 | 36.0 | 2.23e-01 | 75.0% | 90.3% |
| 3174260 | 5.1.3.147 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Beta-prop_ATRN-LZTR1 | 0.51 | 35.0 | 2.19e-01 | 73.4% | 22.6% |
| 3218417 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 37.0 | 3.53e-01 | 84.4% | 85.9% |
| None | — | 0.51 | 43.0 | 2.61e-01 | 100.0% | 17.8% | |
| 4939734 | 244.3.1.8 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › DUF6951 | 0.50 | 35.0 | 3.06e-01 | 100.0% | 44.8% |