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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00181

Bact-Vir

SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00181

Identity

Kingdom:
phage

Quality

87.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 27-88
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rfoA02 3.10.25.10 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain 0.59 41.0 3.45e-01 72.6% 70.5%
3nyqA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.53 41.0 2.59e-01 88.7% 37.7%
5wfiA01 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.52 32.0 2.62e-01 72.6% 30.6%
2z1cB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.42e-01 74.2% 77.0%
1e1hB01 1.20.58.540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 39.0 3.45e-01 88.7% 54.4%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031064 4999.1.1.0 ↗ beta barrels › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX, C-terminal domain-like 0.68 43.0 4.50e-01 72.6% 70.9%
4046879 270.1.1.2 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C 0.59 41.0 3.42e-01 74.2% 68.2%
4478488 270.1.1.2 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C 0.58 39.0 3.34e-01 71.0% 71.4%
4571832 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.56 44.0 3.10e-01 85.5% 64.9%
4556953 270.1.1.2 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C 0.56 38.0 3.09e-01 71.0% 74.2%
3930081 386.1.1.251 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7381 0.56 35.0 3.95e-01 88.7% 97.5%
3211708 145.1.1.30 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › FBA_2 0.55 39.0 2.55e-01 77.4% 17.0%
3723637 108.3.1.0 ↗ alpha arrays › EF-hand › Cloroperoxidase › Cloroperoxidase 0.54 42.0 2.97e-01 91.9% 45.3%
3927639 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 38.0 2.45e-01 77.4% 30.3%
4549781 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 43.0 3.45e-01 93.5% 82.9%
4530211 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 3.47e-01 93.5% 86.4%
3927790 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 32.0 3.57e-01 82.3% 82.2%
4152377 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 41.0 3.42e-01 93.5% 89.6%
3174374 101.1.2.493 ↗ alpha arrays › HTH › HTH › winged helix domain › PF26557 0.51 39.0 3.57e-01 88.7% 73.3%
5077994 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.50 37.0 2.99e-01 83.9% 39.3%
4177859 2.1.1.84 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_N 0.50 35.0 3.47e-01 72.6% 89.2%
3391466 7536.1.1.1 ↗ a/b three-layered sandwiches › GckA/TtuD-like domain 1 › GckA/TtuD-like domain 1 › GckA/TtuD-like domain 1 › DUF4147 0.50 40.0 2.83e-01 98.4% 97.7%