←Back to structures
SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00184
Bact-VirSR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00184
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-157
Domain cluster:
rep: JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00271__D25-165
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4rlcA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.81 | 76.0 | 7.67e-01 | 99.3% | 100.0% |
| 2lhfA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.76 | 70.0 | 6.31e-01 | 97.0% | 100.0% |
| 2ervA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.76 | 68.0 | 6.58e-01 | 95.6% | 100.0% |
| 3dzmB00 | 2.40.160.70 | Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. | 0.75 | 70.0 | 6.04e-01 | 100.0% | 98.0% |
| 1p4tA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.75 | 69.0 | 6.59e-01 | 98.5% | 99.4% |
| 2f1vA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.75 | 69.0 | 6.20e-01 | 100.0% | 97.3% |
| 1qj8A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.72 | 66.0 | 6.38e-01 | 98.5% | 100.0% |
| 6rtqA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.70 | 60.0 | 6.05e-01 | 97.8% | 91.7% |
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.68 | 31.0 | 4.53e-01 | 97.0% | 96.7% |
| 3qq2B00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.67 | 62.0 | 4.99e-01 | 99.3% | 99.6% |
| 4c00A04 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.65 | 57.0 | 4.25e-01 | 91.9% | 44.3% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.65 | 31.0 | 4.43e-01 | 94.1% | 95.4% |
| 1uynX00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.65 | 60.0 | 4.69e-01 | 100.0% | 87.5% |
| 1tlyA00 | 2.40.230.20 | Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Nucleoside-specific channel-forming protein, Tsx-like | 0.64 | 55.0 | 4.48e-01 | 92.6% | 62.5% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 36.0 | 4.54e-01 | 85.9% | 98.7% |
| 2qomB00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.63 | 58.0 | 4.59e-01 | 100.0% | 92.9% |
| 4e1sA00 | 2.40.160.160 | Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain | 0.63 | 58.0 | 4.69e-01 | 98.5% | 84.7% |
| 2wjqA00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.62 | 57.0 | 4.84e-01 | 96.3% | 86.8% |
| 4epaA00 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.62 | 51.0 | 3.31e-01 | 89.6% | 82.6% |
| 3ek7A01 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.61 | 46.0 | 3.72e-01 | 77.8% | 85.8% |
| 1a0sP00 | 2.40.170.10 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type | 0.61 | 53.0 | 3.71e-01 | 92.6% | 39.7% |
| 3fidA00 | 2.40.128.140 | Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein | 0.60 | 53.0 | 4.12e-01 | 95.6% | 100.0% |
| 1nqfA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.60 | 51.0 | 3.62e-01 | 92.6% | 36.0% |
| 6wimA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.60 | 52.0 | 3.71e-01 | 91.1% | 69.1% |
| 2w16A03 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.60 | 51.0 | 3.42e-01 | 93.3% | 31.1% |
| 2hdiA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.59 | 49.0 | 3.39e-01 | 90.4% | 42.3% |
| 1fepA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.59 | 51.0 | 3.38e-01 | 93.3% | 32.1% |
| 1af6A00 | 2.40.170.10 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type | 0.59 | 51.0 | 3.55e-01 | 92.6% | 42.0% |
| 2o4vA00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.58 | 50.0 | 3.59e-01 | 94.8% | 51.8% |
| 3njtA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.58 | 50.0 | 3.79e-01 | 91.9% | 43.8% |
| 3qlbA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.58 | 49.0 | 3.28e-01 | 92.6% | 31.6% |
| 2ns9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 49.0 | 4.73e-01 | 94.1% | 82.4% |
| 4aipC02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.57 | 49.0 | 3.23e-01 | 92.6% | 30.9% |
| 2zylA02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.57 | 51.0 | 4.33e-01 | 97.0% | 68.2% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.56 | 46.0 | 4.48e-01 | 89.6% | 92.3% |
| 1kmoA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.56 | 48.0 | 3.23e-01 | 92.6% | 35.8% |
| 5dl8A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.56 | 47.0 | 3.40e-01 | 91.1% | 40.2% |
| 1bt9A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.55 | 46.0 | 3.49e-01 | 92.6% | 57.1% |
| 2pcsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 46.0 | 4.43e-01 | 96.3% | 81.6% |
| 3vy8X00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.54 | 45.0 | 3.40e-01 | 91.1% | 59.2% |
| 3bnvD00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 39.0 | 3.87e-01 | 75.6% | 87.4% |
| 2pn5A03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 38.0 | 4.25e-01 | 90.4% | 96.2% |
| 1ksiA03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.51 | 38.0 | 2.76e-01 | 79.3% | 93.3% |
| 7a0hA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.51 | 42.0 | 3.94e-01 | 91.9% | 86.8% |
| 3pgbA01 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.50 | 46.0 | 3.09e-01 | 100.0% | 70.7% |
| 3ty1A00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.50 | 44.0 | 3.21e-01 | 97.0% | 85.2% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4130771 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.82 | 76.0 | 6.77e-01 | 98.5% | 94.6% |
| 4042627 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.81 | 75.0 | 6.92e-01 | 97.8% | 100.0% |
| 3970312 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.79 | 75.0 | 6.65e-01 | 98.5% | 100.0% |
| 4417262 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.78 | 72.0 | 6.67e-01 | 97.0% | 100.0% |
| 4285298 | 5084.1.1.29 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF27340 | 0.77 | 72.0 | 6.38e-01 | 100.0% | 98.4% |
| 3838975 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.77 | 72.0 | 6.37e-01 | 99.3% | 99.5% |
| 3980468 | 5084.1.1.9 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PagL | 0.74 | 68.0 | 6.34e-01 | 97.8% | 100.0% |
| 4675848 | 9.2.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin | 0.69 | 59.0 | 5.90e-01 | 97.8% | 87.8% |
| 4009884 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.67 | 63.0 | 4.77e-01 | 100.0% | 86.5% |
| 3967063 | 5084.1.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Phenol_MetA_deg | 0.66 | 60.0 | 4.70e-01 | 99.3% | 92.9% |
| 3971597 | 5084.5.1.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB | 0.66 | 57.0 | 4.17e-01 | 91.9% | 47.0% |
| 3970589 | 5084.5.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 | 0.66 | 58.0 | 4.23e-01 | 93.3% | 48.1% |
| 3983528 | 5084.3.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta | 0.63 | 58.0 | 4.68e-01 | 98.5% | 83.9% |
| 4005087 | 5084.5.1.8 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM | 0.62 | 56.0 | 4.62e-01 | 96.3% | 80.7% |
| 4304754 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.62 | 56.0 | 4.30e-01 | 99.3% | 89.2% |
| 4670451 | 5084.5.4.9 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › UPF0164 | 0.62 | 56.0 | 4.17e-01 | 97.8% | 84.2% |
| 3969394 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.62 | 53.0 | 3.88e-01 | 92.6% | 53.9% |
| 3917130 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.62 | 43.0 | 3.65e-01 | 91.9% | 43.6% |
| 3977722 | 5084.5.1.8 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM | 0.61 | 55.0 | 4.69e-01 | 95.6% | 85.7% |
| 3387368 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.61 | 56.0 | 4.46e-01 | 100.0% | 94.7% |
| 3964155 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.61 | 52.0 | 4.26e-01 | 94.8% | 99.6% |
| 4664957 | 5084.5.2.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like | 0.61 | 53.0 | 3.72e-01 | 92.6% | 42.4% |
| 4064323 | 5084.5.2.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB | 0.60 | 53.0 | 3.67e-01 | 92.6% | 40.3% |
| 200993 | 5084.9.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Lipid A deacylase LpxR › Lipid A deacylase LpxR › LpxR | 0.60 | 53.0 | 4.12e-01 | 95.6% | 100.0% |
| 3941832 | 5084.5.1.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB | 0.60 | 52.0 | 3.72e-01 | 91.9% | 43.2% |
| 4546669 | 5084.5.1.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB | 0.59 | 51.0 | 3.64e-01 | 92.6% | 39.8% |
| 4066147 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.58 | 50.0 | 3.72e-01 | 91.9% | 46.2% |
| 3824851 | 5084.5.1.43 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF30985 | 0.58 | 45.0 | 4.22e-01 | 91.9% | 66.7% |
| 3976425 | 5084.5.1.8 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM | 0.57 | 51.0 | 4.41e-01 | 96.3% | 99.5% |
| 4533056 | 5084.5.2.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB | 0.57 | 50.0 | 3.47e-01 | 92.6% | 39.0% |
| 4522601 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.57 | 47.0 | 3.54e-01 | 91.1% | 68.1% |
| 4458963 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.56 | 49.0 | 3.59e-01 | 92.6% | 48.7% |
| 3273993 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.56 | 44.0 | 3.54e-01 | 89.6% | 43.5% |
| 3978947 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.56 | 48.0 | 3.45e-01 | 92.6% | 51.2% |
| 3967320 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.56 | 48.0 | 3.50e-01 | 93.3% | 52.4% |
| 3391818 | 3070.2.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain | 0.56 | 35.0 | 4.00e-01 | 71.9% | 84.8% |
| 4254174 | 4099.1.1.22 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P | 0.55 | 38.0 | 3.70e-01 | 80.7% | 64.8% |
| 3537631 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.54 | 46.0 | 4.16e-01 | 91.1% | 75.7% |
| 3429047 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.54 | 46.0 | 3.49e-01 | 89.6% | 56.3% |
| 4219386 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.54 | 46.0 | 3.40e-01 | 94.1% | 58.4% |
| 4377480 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.52 | 45.0 | 3.70e-01 | 93.3% | 85.7% |