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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00190
Bact-VirSR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00190
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-67
Domain cluster:
representative
CATH (69)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3sjqC00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.90 | 80.0 | 7.36e-01 | 98.5% | 76.2% |
| 1wleA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.87 | 82.0 | 6.64e-01 | 100.0% | 69.3% |
| 3r84A00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.87 | 82.0 | 7.52e-01 | 100.0% | 80.2% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.87 | 83.0 | 6.83e-01 | 100.0% | 64.2% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.87 | 81.0 | 6.62e-01 | 100.0% | 65.2% |
| 6r1nA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.87 | 82.0 | 6.84e-01 | 100.0% | 68.0% |
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.87 | 77.0 | 7.34e-01 | 100.0% | 83.6% |
| 2fb5A01 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.87 | 72.0 | 6.96e-01 | 100.0% | 80.6% |
| 2fcwA00 | 1.20.81.10 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain | 0.86 | 73.0 | 6.10e-01 | 100.0% | 55.7% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.85 | 75.0 | 6.74e-01 | 100.0% | 72.1% |
| 3fd9A03 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.85 | 79.0 | 7.59e-01 | 100.0% | 89.0% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.85 | 62.0 | 4.78e-01 | 87.7% | 37.6% |
| 3ehfD01 | 1.20.5.1930 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.84 | 71.0 | 7.22e-01 | 98.5% | 92.1% |
| 4ijjB00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.84 | 78.0 | 6.09e-01 | 100.0% | 51.5% |
| 1avoB00 | 1.20.120.180 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain | 0.84 | 71.0 | 5.36e-01 | 100.0% | 41.4% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.83 | 73.0 | 6.19e-01 | 100.0% | 59.6% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.82 | 76.0 | 7.13e-01 | 100.0% | 94.8% |
| 1fs0G02 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.82 | 76.0 | 6.75e-01 | 100.0% | 77.5% |
| 6gy8A01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.82 | 74.0 | 4.63e-01 | 100.0% | 78.6% |
| 1yg2A02 | 6.10.140.190 | Special › Helix non-globular › Helix Hairpins › | 0.81 | 77.0 | 6.76e-01 | 100.0% | 72.2% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.80 | 69.0 | 6.42e-01 | 90.8% | 79.5% |
| 2bdeA03 | 1.20.58.1160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.80 | 74.0 | 6.98e-01 | 100.0% | 85.7% |
| 3eabE00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.80 | 66.0 | 5.93e-01 | 89.2% | 66.3% |
| 1fewA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.80 | 73.0 | 5.23e-01 | 100.0% | 42.8% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.80 | 72.0 | 6.75e-01 | 100.0% | 94.9% |
| 2kp8A00 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.79 | 62.0 | 6.02e-01 | 100.0% | 76.4% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.79 | 74.0 | 6.32e-01 | 100.0% | 90.9% |
| 4cqiA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.79 | 71.0 | 5.96e-01 | 98.5% | 80.4% |
| 2jexA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.79 | 72.0 | 6.23e-01 | 98.5% | 67.7% |
| 8fbnB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.78 | 72.0 | 4.84e-01 | 100.0% | 30.2% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.78 | 70.0 | 6.65e-01 | 100.0% | 85.7% |
| 2qe7G01 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.78 | 71.0 | 6.14e-01 | 100.0% | 71.1% |
| 2gtaA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.78 | 62.0 | 5.40e-01 | 100.0% | 57.7% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.78 | 69.0 | 6.75e-01 | 100.0% | 88.7% |
| 1ku9A02 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.77 | 67.0 | 6.80e-01 | 93.8% | 100.0% |
| 3terA00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.77 | 71.0 | 5.71e-01 | 100.0% | 55.5% |
| 1pd3A00 | 1.10.287.230 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.77 | 60.0 | 6.49e-01 | 92.3% | 100.0% |
| 2a3qA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.77 | 64.0 | 5.23e-01 | 100.0% | 51.3% |
| 4hz4A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.76 | 64.0 | 5.35e-01 | 100.0% | 54.5% |
| 4fxxB01 | 6.10.140.1790 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 65.0 | 6.28e-01 | 90.8% | 91.7% |
| 1m6nA04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.75 | 56.0 | 4.40e-01 | 100.0% | 38.5% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.74 | 56.0 | 5.34e-01 | 100.0% | 69.2% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.74 | 66.0 | 5.68e-01 | 100.0% | 64.7% |
| 4i0xH00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.73 | 63.0 | 6.06e-01 | 100.0% | 94.7% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.73 | 64.0 | 6.07e-01 | 100.0% | 98.7% |
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 61.0 | 5.43e-01 | 96.9% | 65.3% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 57.0 | 5.76e-01 | 87.7% | 84.6% |
| 3nrxA00 | 1.20.58.1520 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 61.0 | 5.06e-01 | 100.0% | 53.7% |
| 4cemA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.71 | 62.0 | 3.99e-01 | 100.0% | 21.5% |
| 1wa8A00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.71 | 60.0 | 5.33e-01 | 100.0% | 68.7% |
| 2cwoA01 | 1.20.58.1200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RNA silencing suppressor P21, N-terminal domain | 0.70 | 56.0 | 5.42e-01 | 86.2% | 75.7% |
| 1rfyB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.70 | 59.0 | 5.41e-01 | 95.4% | 80.7% |
| 2etnB01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.70 | 60.0 | 5.80e-01 | 100.0% | 89.5% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.70 | 59.0 | 6.00e-01 | 98.5% | 98.4% |
| 2b3tB01 | 6.10.140.1980 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 55.0 | 5.58e-01 | 92.3% | 87.7% |
| 3oqlC00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.68 | 60.0 | 4.02e-01 | 100.0% | 26.4% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.67 | 58.0 | 4.94e-01 | 100.0% | 62.7% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.67 | 58.0 | 5.38e-01 | 98.5% | 82.4% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 58.0 | 5.04e-01 | 100.0% | 64.7% |
| 3g80A00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.66 | 56.0 | 5.44e-01 | 98.5% | 90.4% |
| 2xokP00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.65 | 55.0 | 5.30e-01 | 100.0% | 85.1% |
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.65 | 55.0 | 4.29e-01 | 96.9% | 44.8% |
| 4gzrC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.64 | 52.0 | 5.36e-01 | 87.7% | 96.7% |
| 2ckzA01 | 6.10.140.870 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 43.0 | 4.93e-01 | 70.8% | 100.0% |
| 3khkB01 | 1.20.1260.30 | Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain | 0.62 | 55.0 | 4.15e-01 | 100.0% | 73.0% |
| 2p5tA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.61 | 49.0 | 4.42e-01 | 92.3% | 64.1% |
| 1zylA03 | 1.20.1270.170 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.61 | 47.0 | 4.17e-01 | 92.3% | 56.3% |
| 1m62A00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.57 | 46.0 | 4.22e-01 | 96.9% | 67.8% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.56 | 48.0 | 4.69e-01 | 100.0% | 89.2% |
ECOD (65)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4474737 | 3711.1.1.44 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › Med11 | 0.93 | 66.0 | 5.82e-01 | 100.0% | 53.3% |
| 3512620 | 3755.4.1.1 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PI3K_P85_iSH2 | 0.89 | 85.0 | 6.09e-01 | 100.0% | 60.6% |
| 4604091 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.88 | 84.0 | 7.07e-01 | 100.0% | 93.0% |
| 3642640 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.88 | 83.0 | 5.15e-01 | 100.0% | 81.9% |
| 5057549 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.88 | 80.0 | 6.33e-01 | 100.0% | 52.5% |
| 3913300 | 3755.3.1.303 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A_4th | 0.88 | 83.0 | 6.13e-01 | 100.0% | 94.7% |
| 4977416 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.88 | 84.0 | 5.44e-01 | 100.0% | 36.0% |
| 3715005 | 604.8.1.0 ↗ | alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo | 0.88 | 74.0 | 5.36e-01 | 100.0% | 36.3% |
| 418119 | 3712.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 | 0.87 | 82.0 | 7.53e-01 | 100.0% | 81.2% |
| 3741801 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.87 | 80.0 | 6.20e-01 | 100.0% | 50.4% |
| 3632812 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.86 | 81.0 | 5.74e-01 | 100.0% | 42.9% |
| 3937465 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.86 | 81.0 | 5.40e-01 | 100.0% | 35.3% |
| 149872 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.86 | 81.0 | 7.47e-01 | 100.0% | 91.1% |
| 3004237 | 3712.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 | 0.85 | 80.0 | 6.56e-01 | 100.0% | 60.2% |
| 3596488 | 3737.1.1.0 ↗ | alpha duplicates or obligate multimers › Major allergen Bla g 1 tandem repeats › Major allergen Bla g 1 tandem repeats › Major allergen Bla g 1 tandem repeats | 0.85 | 80.0 | 6.25e-01 | 100.0% | 61.6% |
| 3634169 | 4177.1.1.27 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_4 | 0.85 | 78.0 | 4.99e-01 | 100.0% | 25.1% |
| 3930310 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.85 | 74.0 | 6.56e-01 | 92.3% | 67.4% |
| 3541678 | 101.1.1.117 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CHDCT2 | 0.84 | 78.0 | 6.75e-01 | 98.5% | 67.4% |
| 4043561 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.84 | 79.0 | 6.47e-01 | 100.0% | 65.5% |
| 3693258 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.84 | 79.0 | 6.46e-01 | 100.0% | 59.1% |
| 3490268 | 148.1.3.13 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_9 | 0.84 | 79.0 | 4.84e-01 | 100.0% | 20.6% |
| 3832135 | 604.6.1.2 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › ANTH | 0.84 | 75.0 | 5.75e-01 | 100.0% | 45.9% |
| 3699443 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.84 | 78.0 | 6.30e-01 | 100.0% | 79.1% |
| 3780286 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.84 | 79.0 | 4.49e-01 | 100.0% | 11.7% |
| 3326073 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.83 | 78.0 | 6.39e-01 | 100.0% | 59.1% |
| 3810801 | 632.22.1.139 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › KIF21A_4th | 0.83 | 78.0 | 5.77e-01 | 100.0% | 93.3% |
| 3912433 | 603.1.1.5 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N | 0.83 | 76.0 | 5.85e-01 | 100.0% | 48.9% |
| 4406905 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.82 | 70.0 | 6.84e-01 | 100.0% | 84.3% |
| 3597411 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.82 | 74.0 | 4.42e-01 | 95.4% | 15.7% |
| 3876590 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.82 | 65.0 | 5.89e-01 | 100.0% | 64.7% |
| 2708 | 101.1.2.49 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C | 0.81 | 77.0 | 5.47e-01 | 100.0% | 38.5% |
| 3785314 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.81 | 74.0 | 4.89e-01 | 100.0% | 26.9% |
| 5043865 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.81 | 77.0 | 5.71e-01 | 100.0% | 44.8% |
| 4315986 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.80 | 75.0 | 6.60e-01 | 100.0% | 72.2% |
| 3258119 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.80 | 73.0 | 4.92e-01 | 100.0% | 32.4% |
| 3770414 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.79 | 71.0 | 5.99e-01 | 98.5% | 61.9% |
| 3592028 | 109.4.1.218 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAP | 0.79 | 70.0 | 4.96e-01 | 96.9% | 35.1% |
| 5050733 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.79 | 73.0 | 6.12e-01 | 100.0% | 76.2% |
| 3791250 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.79 | 72.0 | 5.34e-01 | 100.0% | 43.2% |
| 4297833 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.78 | 71.0 | 6.33e-01 | 100.0% | 73.3% |
| 2749857 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.77 | 72.0 | 4.54e-01 | 100.0% | 29.8% |
| 4628387 | 616.1.1.1 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 | 0.77 | 72.0 | 6.47e-01 | 98.5% | 80.0% |
| 3611632 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.76 | 69.0 | 5.94e-01 | 100.0% | 74.0% |
| 3399005 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.76 | 67.0 | 6.03e-01 | 100.0% | 100.0% |
| 3565534 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.75 | 68.0 | 4.54e-01 | 100.0% | 51.8% |
| 3350539 | 192.23.1.6 ↗ | alpha bundles › Long alpha-hairpin › DUF683 › DUF683 › Med10 | 0.75 | 63.0 | 5.73e-01 | 90.8% | 80.0% |
| 4209793 | 1203.1.2.0 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 | 0.75 | 66.0 | 4.73e-01 | 100.0% | 35.3% |
| 3926392 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.74 | 66.0 | 5.16e-01 | 98.5% | 95.6% |
| 3349325 | 5086.1.1.135 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF7615 | 0.72 | 60.0 | 5.69e-01 | 100.0% | 77.5% |
| 3276646 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.71 | 62.0 | 4.90e-01 | 100.0% | 46.4% |
| 4978412 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.71 | 61.0 | 4.52e-01 | 98.5% | 36.6% |
| 3651322 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 59.0 | 3.82e-01 | 100.0% | 19.1% |
| 4465072 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.71 | 61.0 | 5.15e-01 | 100.0% | 60.9% |
| 3486085 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.70 | 59.0 | 4.88e-01 | 95.4% | 74.2% |
| 3382610 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.69 | 60.0 | 4.01e-01 | 100.0% | 24.8% |
| 3535346 | 2004.1.1.184 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 | 0.69 | 58.0 | 3.57e-01 | 100.0% | 14.6% |
| 3399533 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.69 | 59.0 | 4.55e-01 | 100.0% | 41.9% |
| 3535653 | 633.16.1.4 ↗ | alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like › SOAR | 0.67 | 57.0 | 4.76e-01 | 100.0% | 55.0% |
| 60297 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.67 | 58.0 | 5.57e-01 | 100.0% | 90.7% |
| 3287947 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.66 | 57.0 | 5.20e-01 | 100.0% | 74.4% |
| 2893266 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.66 | 57.0 | 5.15e-01 | 100.0% | 72.8% |
| 4402843 | 604.1.1.20 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › AKNA | 0.66 | 56.0 | 4.79e-01 | 100.0% | 58.3% |
| 3494616 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.64 | 54.0 | 5.02e-01 | 100.0% | 80.0% |
| 4944005 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.59 | 49.0 | 4.49e-01 | 96.9% | 71.1% |
| 3628151 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.59 | 50.0 | 3.85e-01 | 98.5% | 38.8% |
D2
high
residues 69-145
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.92 | 63.0 | 7.25e-01 | 100.0% | 94.7% |
| 2zw3A00 | 1.20.1440.80 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain | 0.78 | 72.0 | 5.20e-01 | 100.0% | 41.8% |
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.75 | 69.0 | 4.81e-01 | 100.0% | 62.7% |
| 5yjlB01 | 3.30.460.30 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain | 0.75 | 49.0 | 3.75e-01 | 96.1% | 32.3% |
| 1fxkC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.74 | 69.0 | 5.66e-01 | 100.0% | 78.9% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.73 | 69.0 | 6.10e-01 | 100.0% | 75.5% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.72 | 68.0 | 5.91e-01 | 100.0% | 73.4% |
| 1l8dA00 | 1.10.287.510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.72 | 67.0 | 6.02e-01 | 100.0% | 75.7% |
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.72 | 67.0 | 6.19e-01 | 100.0% | 85.1% |
| 6l3tA01 | 1.20.1440.80 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain | 0.65 | 55.0 | 4.21e-01 | 98.7% | 43.2% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.65 | 47.0 | 4.21e-01 | 87.0% | 53.6% |
| 7drjB01 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.63 | 51.0 | 3.85e-01 | 100.0% | 37.2% |
| 3nnbA01 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.62 | 43.0 | 2.79e-01 | 98.7% | 15.1% |
| 6z3tA01 | 1.10.3370.10 | Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain | 0.60 | 49.0 | 3.15e-01 | 90.9% | 49.5% |
| 1qviA01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.58 | 50.0 | 4.43e-01 | 97.4% | 91.3% |
| 3mk7C01 | 6.10.280.130 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 51.0 | 4.79e-01 | 100.0% | 96.8% |
| 4wnoA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 29.0 | 2.85e-01 | 96.1% | 40.2% |
| 2dr1A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.57 | 41.0 | 3.36e-01 | 93.5% | 43.0% |
| 3qcpA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 50.0 | 3.79e-01 | 97.4% | 98.8% |
| 2e5vA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 33.0 | 2.27e-01 | 77.9% | 16.5% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 37.0 | 3.43e-01 | 90.9% | 56.7% |
| 2yqrA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.54 | 46.0 | 4.18e-01 | 93.5% | 84.5% |
| 1vw4H00 | 3.90.1180.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 | 0.54 | 34.0 | 2.78e-01 | 92.2% | 33.1% |
| 1lkxC03 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.53 | 43.0 | 3.91e-01 | 89.6% | 99.1% |
| 1e3hA03 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.52 | 47.0 | 3.40e-01 | 98.7% | 96.7% |
| 4uoyA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 42.0 | 3.06e-01 | 85.7% | 74.5% |
| 4fr4D01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 33.0 | 2.80e-01 | 100.0% | 38.8% |
| 6ui4A01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.52 | 44.0 | 4.19e-01 | 90.9% | 98.9% |
| 1l3aA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.52 | 46.0 | 3.56e-01 | 98.7% | 81.9% |
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.50 | 43.0 | 3.72e-01 | 93.5% | 61.9% |
ECOD (69)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4929746 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.78 | 73.0 | 5.74e-01 | 100.0% | 69.1% |
| 4564040 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.78 | 73.0 | 5.92e-01 | 100.0% | 86.7% |
| 5036394 | 101.1.9.152 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_28 | 0.75 | 71.0 | 5.30e-01 | 100.0% | 52.9% |
| 5073682 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.75 | 71.0 | 5.67e-01 | 100.0% | 74.6% |
| 5062471 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.75 | 69.0 | 6.07e-01 | 100.0% | 98.2% |
| 4987009 | 3837.1.1.1 ↗ | alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 | 0.75 | 71.0 | 5.50e-01 | 100.0% | 58.0% |
| 3619580 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.75 | 70.0 | 6.20e-01 | 100.0% | 73.3% |
| 5000789 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.74 | 70.0 | 6.19e-01 | 100.0% | 79.0% |
| 3237990 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.74 | 62.0 | 4.56e-01 | 100.0% | 35.9% |
| 4368133 | 5086.1.1.172 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › UCH_C | 0.73 | 70.0 | 5.76e-01 | 100.0% | 68.0% |
| 4981980 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.73 | 69.0 | 5.91e-01 | 100.0% | 70.4% |
| 4940192 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.73 | 69.0 | 5.88e-01 | 100.0% | 68.4% |
| 5047150 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.72 | 68.0 | 4.87e-01 | 100.0% | 39.0% |
| 4025655 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.72 | 67.0 | 6.21e-01 | 100.0% | 87.4% |
| 3532021 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.72 | 67.0 | 5.50e-01 | 100.0% | 63.1% |
| 4662222 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.71 | 66.0 | 5.63e-01 | 100.0% | 67.5% |
| 3236563 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.71 | 65.0 | 5.49e-01 | 100.0% | 80.8% |
| 3726210 | 192.15.1.2 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Mod_r | 0.71 | 67.0 | 4.93e-01 | 100.0% | 42.8% |
| 3969345 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.71 | 64.0 | 4.57e-01 | 98.7% | 35.0% |
| 3921728 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.71 | 65.0 | 5.61e-01 | 100.0% | 85.2% |
| 3290393 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.70 | 46.0 | 3.04e-01 | 85.7% | 17.0% |
| 4311291 | 109.4.1.2202 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27584, PF27595 | 0.70 | 63.0 | 3.48e-01 | 100.0% | 7.3% |
| 4990636 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.70 | 61.0 | 5.21e-01 | 100.0% | 81.5% |
| 5056727 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.70 | 65.0 | 4.67e-01 | 100.0% | 80.0% |
| 5057974 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.70 | 61.0 | 5.41e-01 | 100.0% | 94.8% |
| 3009971 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.70 | 64.0 | 6.14e-01 | 100.0% | 92.0% |
| 3280119 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.69 | 63.0 | 4.75e-01 | 100.0% | 43.3% |
| 3881316 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.68 | 65.0 | 4.63e-01 | 100.0% | 40.0% |
| 4024941 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.68 | 62.0 | 4.64e-01 | 100.0% | 44.4% |
| 3775175 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.67 | 60.0 | 5.55e-01 | 100.0% | 80.0% |
| 3955219 | 633.23.1.16 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Trp_oprn_chp | 0.67 | 61.0 | 4.68e-01 | 100.0% | 50.9% |
| 3616294 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.66 | 61.0 | 5.11e-01 | 100.0% | 77.6% |
| 3679054 | 601.1.1.40 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › PGG | 0.66 | 55.0 | 4.48e-01 | 90.9% | 55.0% |
| 5073431 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.65 | 48.0 | 2.91e-01 | 79.2% | 13.1% |
| 3183768 | 109.4.1.63 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TAP42 | 0.64 | 55.0 | 3.70e-01 | 94.8% | 26.9% |
| 4944677 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.63 | 56.0 | 5.20e-01 | 100.0% | 77.0% |
| 3980619 | 4038.1.1.7 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal_2 | 0.62 | 54.0 | 3.57e-01 | 100.0% | 23.1% |
| 3502058 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.62 | 26.0 | 2.81e-01 | 81.8% | 40.0% |
| 3822661 | 7064.1.1.0 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 | 0.62 | 55.0 | 4.14e-01 | 98.7% | 83.8% |
| None | — | 0.61 | 55.0 | 3.33e-01 | 97.4% | 75.1% | |
| 3785655 | 109.26.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | 0.61 | 44.0 | 3.45e-01 | 97.4% | 34.3% |
| 4626208 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.60 | 51.0 | 4.01e-01 | 88.3% | 46.9% |
| 3466238 | 206.1.1.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 | 0.60 | 47.0 | 2.89e-01 | 89.6% | 14.4% |
| 4416711 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.60 | 52.0 | 3.39e-01 | 100.0% | 21.6% |
| 3829362 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.60 | 53.0 | 3.45e-01 | 97.4% | 63.6% |
| 4033043 | 616.1.1.41 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Terminase_4 | 0.59 | 45.0 | 4.37e-01 | 100.0% | 72.2% |
| 4588825 | 589.1.1.20 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › TraD_N | 0.59 | 49.0 | 4.11e-01 | 90.9% | 74.6% |
| 4408503 | 192.2.1.43 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › TraD_N | 0.59 | 50.0 | 4.08e-01 | 90.9% | 71.9% |
| 3624363 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.59 | 48.0 | 3.36e-01 | 90.9% | 56.9% |
| 5005723 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.58 | 51.0 | 3.49e-01 | 100.0% | 28.6% |
| 3512585 | 5010.1.1.5 ↗ | extended segments › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › TraD_N | 0.58 | 49.0 | 4.30e-01 | 93.5% | 87.0% |
| 4318691 | 5061.1.1.1 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY | 0.57 | 48.0 | 3.12e-01 | 97.4% | 98.5% |
| 4022202 | 109.4.1.1588 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27584, PF27595, PF30849 | 0.57 | 49.0 | 2.69e-01 | 98.7% | 5.9% |
| 3788504 | 5061.1.1.2 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY,Plug_translocon | 0.57 | 49.0 | 3.05e-01 | 98.7% | 40.4% |
| 4270827 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.57 | 49.0 | 3.68e-01 | 93.5% | 69.4% |
| 4030041 | 4207.1.1.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) | 0.55 | 48.0 | 4.09e-01 | 100.0% | 60.8% |
| 3636696 | 3745.1.1.1 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex | 0.55 | 49.0 | 3.05e-01 | 100.0% | 55.4% |
| 3498981 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.54 | 47.0 | 2.92e-01 | 100.0% | 16.3% |
| 4069414 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.54 | 48.0 | 3.73e-01 | 100.0% | 97.6% |
| 3946654 | 517.2.1.0 ↗ | beta barrels › CBF-like › TraF › TraF | 0.54 | 46.0 | 3.21e-01 | 100.0% | 27.6% |
| 3905174 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.53 | 43.0 | 3.82e-01 | 94.8% | 60.9% |
| 3463329 | 327.18.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A › Ribosomal_S7e | 0.53 | 42.0 | 3.79e-01 | 90.9% | 61.1% |
| 3325927 | 109.4.1.1258 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 | 0.52 | 47.0 | 3.25e-01 | 100.0% | 31.4% |
| 5039294 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.52 | 40.0 | 2.86e-01 | 89.6% | 54.6% |
| 3181590 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.51 | 38.0 | 3.80e-01 | 93.5% | 76.2% |
| 4030791 | 4038.1.1.2 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_prot_Gp6 | 0.51 | 44.0 | 2.94e-01 | 100.0% | 26.0% |
| 5012782 | 3501.1.1.2 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › DUF2067 | 0.51 | 34.0 | 3.68e-01 | 100.0% | 81.5% |
| 3357805 | 3887.2.1.1 ↗ | a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung | 0.50 | 42.0 | 4.29e-01 | 90.9% | 93.3% |
| 3219009 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.50 | 38.0 | 3.75e-01 | 84.4% | 75.3% |