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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00192
Bact-VirSR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00192
Identity
- Kingdom:
- phage
Quality
89.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-57
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4o1jA00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.65 | 50.0 | 3.54e-01 | 87.7% | 59.9% |
| 2yviA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.61 | 48.0 | 4.18e-01 | 87.7% | 66.3% |
| 2kvsA00 | 1.10.150.260 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › YozE SAM-like | 0.60 | 43.0 | 3.89e-01 | 75.4% | 96.2% |
| 1a62A01 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.58 | 43.0 | 4.63e-01 | 82.5% | 97.8% |
| 3hw5B00 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.55 | 45.0 | 3.35e-01 | 100.0% | 64.4% |
| 1ze0A02 | 1.10.4070.10 | Mainly Alpha › Orthogonal Bundle › putative redox-enzyme maturation protein fold › putative redox-enzyme maturation protein domain | 0.54 | 41.0 | 3.79e-01 | 86.0% | 75.6% |
| 7fsfA02 | 3.30.56.80 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.54 | 36.0 | 3.43e-01 | 73.7% | 56.5% |
| 3l0oA01 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.54 | 39.0 | 4.07e-01 | 86.0% | 91.8% |
| 4akvA02 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.53 | 41.0 | 2.84e-01 | 84.2% | 92.6% |
| 4ol8B03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.51 | 37.0 | 3.28e-01 | 80.7% | 71.1% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3969653 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.67 | 46.0 | 4.11e-01 | 70.2% | 50.0% |
| 3943133 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.62 | 45.0 | 4.98e-01 | 82.5% | 100.0% |
| 3849657 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.61 | 49.0 | 4.13e-01 | 89.5% | 64.0% |
| 3237824 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.59 | 43.0 | 3.20e-01 | 78.9% | 82.7% |
| 3611122 | 130.1.1.32 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP_RNF34_RFFL (DEPRECATED) | 0.59 | 47.0 | 4.79e-01 | 93.0% | 96.4% |
| 4260463 | 130.1.1.3 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N | 0.59 | 43.0 | 4.75e-01 | 82.5% | 100.0% |
| 3268404 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.58 | 49.0 | 4.89e-01 | 94.7% | 100.0% |
| 3622049 | 130.1.1.2 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › LEM | 0.58 | 40.0 | 4.03e-01 | 75.4% | 91.7% |
| 3269634 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.58 | 48.0 | 4.79e-01 | 96.5% | 93.3% |
| 3173158 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 42.0 | 4.37e-01 | 82.5% | 92.0% |
| 4428371 | 130.1.1.3 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N | 0.57 | 40.0 | 4.33e-01 | 77.2% | 93.3% |
| 3511721 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.54 | 36.0 | 3.97e-01 | 73.7% | 88.9% |
| 3724166 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.53 | 40.0 | 3.91e-01 | 87.7% | 76.9% |
| 4136263 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.52 | 37.0 | 4.05e-01 | 75.4% | 95.6% |
| 3198528 | 130.1.1.16 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 | 0.51 | 37.0 | 3.81e-01 | 82.5% | 85.5% |
D2
medium
residues 58-123
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zv1A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.77 | 47.0 | 4.97e-01 | 100.0% | 69.5% |
| 2gslF00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.73 | 63.0 | 5.19e-01 | 100.0% | 83.5% |
| 2lrmA00 | 1.10.890.30 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein | 0.70 | 55.0 | 5.10e-01 | 100.0% | 67.9% |
| 1t6jA03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.68 | 55.0 | 4.83e-01 | 100.0% | 59.2% |
| 1mijA00 | 1.10.10.500 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeo-prospero domain | 0.66 | 50.0 | 3.98e-01 | 83.3% | 78.4% |
| 4gf0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.64 | 46.0 | 3.94e-01 | 78.8% | 56.6% |
| 2klqA00 | 1.20.58.870 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 53.0 | 4.41e-01 | 92.4% | 64.9% |
| 2eh3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.63 | 43.0 | 3.59e-01 | 75.8% | 39.3% |
| 2kkmA01 | 1.20.1440.170 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Translation machinery-associated protein 16-like | 0.63 | 44.0 | 3.59e-01 | 74.2% | 40.0% |
| 1z8fA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 45.0 | 3.68e-01 | 86.4% | 41.3% |
| 1j09A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.62 | 41.0 | 4.56e-01 | 98.5% | 93.8% |
| 4d8mA01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.61 | 44.0 | 3.12e-01 | 77.3% | 42.6% |
| 1vplA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 51.0 | 3.47e-01 | 100.0% | 26.5% |
| 3fblA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 49.0 | 4.57e-01 | 93.9% | 98.8% |
| 6znjB01 | 3.40.50.10950 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 44.0 | 3.54e-01 | 87.9% | 69.9% |
| 3t5vA00 | 1.25.40.990 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.57 | 41.0 | 2.76e-01 | 78.8% | 17.7% |
| 1y74A00 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.57 | 39.0 | 4.13e-01 | 71.2% | 91.2% |
| 1z72A00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.57 | 45.0 | 3.17e-01 | 87.9% | 38.9% |
| 1aisB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 48.0 | 4.23e-01 | 97.0% | 79.8% |
| 4dwlA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.56 | 40.0 | 3.51e-01 | 78.8% | 85.2% |
| 8d7hD01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.56 | 45.0 | 3.41e-01 | 92.4% | 87.3% |
| 2qvaA01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.56 | 42.0 | 3.45e-01 | 83.3% | 47.3% |
| 4cpgA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.55 | 40.0 | 3.95e-01 | 89.4% | 73.9% |
| 2i7uA00 | 6.10.250.1010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.55 | 36.0 | 3.75e-01 | 71.2% | 72.6% |
| 3gaeA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.55 | 40.0 | 2.74e-01 | 78.8% | 21.3% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.54 | 44.0 | 4.03e-01 | 92.4% | 88.9% |
| 3pivA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.54 | 45.0 | 3.50e-01 | 95.5% | 88.5% |
| 1mjtB01 | 3.90.340.10 | Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 | 0.54 | 43.0 | 3.56e-01 | 90.9% | 76.0% |
| 7wboA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.50 | 42.0 | 3.20e-01 | 100.0% | 46.7% |
| 4oe8C00 | 1.10.8.1170 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.50 | 44.0 | 4.04e-01 | 100.0% | 74.7% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4021621 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.72 | 63.0 | 5.45e-01 | 100.0% | 63.8% |
| 3391169 | 103.4.1.25 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF27628 | 0.70 | 55.0 | 5.45e-01 | 100.0% | 81.4% |
| 4197827 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.68 | 49.0 | 3.77e-01 | 75.8% | 57.3% |
| 4959473 | 148.1.3.411 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › HAAS | 0.67 | 52.0 | 5.27e-01 | 92.4% | 89.2% |
| 3578915 | 7073.1.1.1 ↗ | alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › Malic_M | 0.66 | 57.0 | 4.53e-01 | 100.0% | 71.4% |
| 4941346 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.66 | 57.0 | 5.50e-01 | 98.5% | 86.7% |
| 4993046 | 103.4.1.30 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF28863 | 0.65 | 57.0 | 5.30e-01 | 100.0% | 84.7% |
| 5028352 | 103.4.1.30 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF28863 | 0.64 | 55.0 | 5.14e-01 | 98.5% | 85.9% |
| 3931272 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.64 | 56.0 | 4.16e-01 | 100.0% | 69.7% |
| 4558042 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.64 | 45.0 | 4.34e-01 | 80.3% | 65.3% |
| 4149728 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.63 | 48.0 | 4.51e-01 | 81.8% | 86.3% |
| 4959600 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.63 | 52.0 | 4.94e-01 | 100.0% | 80.0% |
| 5060948 | 4957.1.1.9 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit › HAAS | 0.63 | 55.0 | 5.31e-01 | 98.5% | 92.0% |
| 3798363 | 188.1.1.0 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain | 0.62 | 53.0 | 3.63e-01 | 100.0% | 57.2% |
| 4025271 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.61 | 44.0 | 3.86e-01 | 77.3% | 60.0% |
| 4998120 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.60 | 50.0 | 3.55e-01 | 93.9% | 87.9% |
| 3925075 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.60 | 42.0 | 4.14e-01 | 77.3% | 70.0% |
| 5043291 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.60 | 45.0 | 4.26e-01 | 81.8% | 85.0% |
| 3997160 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.58 | 48.0 | 4.34e-01 | 100.0% | 71.0% |
| 3597686 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.57 | 48.0 | 4.35e-01 | 92.4% | 76.7% |
| 3396002 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 43.0 | 3.02e-01 | 83.3% | 49.3% |
| 4990095 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.55 | 42.0 | 3.88e-01 | 81.8% | 64.7% |
| 5045411 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.55 | 41.0 | 2.86e-01 | 80.3% | 92.7% |
| 3410614 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.54 | 45.0 | 3.89e-01 | 92.4% | 81.0% |
| 3214360 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.54 | 46.0 | 4.28e-01 | 98.5% | 95.3% |
| 3167091 | 148.1.1.12 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP | 0.53 | 46.0 | 4.23e-01 | 100.0% | 92.2% |
| 4934569 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.53 | 45.0 | 3.59e-01 | 100.0% | 78.6% |
| 3722689 | 148.1.1.12 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP | 0.53 | 44.0 | 3.74e-01 | 98.5% | 91.7% |