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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00205
Bact-VirSR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00205
Identity
- Kingdom:
- phage
Quality
94.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-104
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fssA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.67 | 44.0 | 4.79e-01 | 100.0% | 80.2% |
| 3u12A00 | 2.30.29.180 | Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain | 0.66 | 50.0 | 5.06e-01 | 90.2% | 79.8% |
| 3pp2A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.64 | 54.0 | 5.24e-01 | 90.2% | 83.0% |
| 1njhA00 | 2.70.180.10 | Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF | 0.64 | 54.0 | 5.36e-01 | 94.1% | 90.7% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 37.0 | 4.45e-01 | 92.2% | 95.2% |
| 5ygbA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 37.0 | 4.10e-01 | 89.2% | 75.0% |
| 2lydA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 46.0 | 4.27e-01 | 87.3% | 62.7% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.59 | 35.0 | 4.17e-01 | 85.3% | 93.7% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 35.0 | 4.11e-01 | 91.2% | 89.4% |
| 3fvcA03 | 2.30.29.100 | Mainly Beta › Roll › PH-domain like › | 0.58 | 49.0 | 4.76e-01 | 90.2% | 93.6% |
| 3n8hA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.56 | 28.0 | 3.12e-01 | 70.6% | 57.9% |
| 5j3tA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 50.0 | 4.68e-01 | 100.0% | 81.7% |
| 2x8fA02 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.56 | 46.0 | 4.75e-01 | 89.2% | 100.0% |
| 2d9xA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 42.0 | 4.13e-01 | 93.1% | 78.2% |
| 3apuB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 44.0 | 3.80e-01 | 93.1% | 68.6% |
| 1iy9A02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.53 | 28.0 | 3.58e-01 | 77.5% | 96.2% |
| 3l4rA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 46.0 | 4.13e-01 | 100.0% | 76.2% |
| 2la7A01 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 44.0 | 4.14e-01 | 93.1% | 96.9% |
| 3rwxA02 | 2.40.128.350 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 45.0 | 4.13e-01 | 94.1% | 100.0% |
| 2krsA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 31.0 | 3.91e-01 | 76.5% | 100.0% |
| 1e8oD00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.52 | 32.0 | 3.56e-01 | 77.5% | 80.3% |
| 3v8uA02 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.52 | 42.0 | 3.56e-01 | 89.2% | 95.5% |
| 3mx7A00 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 33.0 | 3.52e-01 | 71.6% | 74.4% |
| 2b2cA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.51 | 29.0 | 3.49e-01 | 73.5% | 87.5% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081361 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.76 | 52.0 | 5.25e-01 | 87.3% | 71.0% |
| 3594856 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.69 | 52.0 | 5.09e-01 | 94.1% | 72.7% |
| 3786604 | 220.1.1.244 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF31261 | 0.69 | 49.0 | 4.56e-01 | 98.0% | 60.0% |
| 4404324 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.68 | 44.0 | 4.78e-01 | 78.4% | 78.8% |
| 3937216 | 220.1.1.13 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 | 0.67 | 51.0 | 4.76e-01 | 99.0% | 64.6% |
| 3648024 | 220.1.1.13 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 | 0.66 | 51.0 | 4.81e-01 | 91.2% | 67.2% |
| 3690811 | 220.1.1.67 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 | 0.66 | 48.0 | 4.86e-01 | 87.3% | 77.0% |
| 4028885 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.66 | 40.0 | 4.78e-01 | 92.2% | 93.8% |
| 3713703 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 51.0 | 4.94e-01 | 95.1% | 73.0% |
| 3259514 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 50.0 | 4.78e-01 | 99.0% | 69.2% |
| 4037383 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.65 | 39.0 | 4.61e-01 | 92.2% | 92.3% |
| 3599172 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 39.0 | 4.63e-01 | 92.2% | 92.3% |
| 3687369 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.64 | 52.0 | 5.26e-01 | 93.1% | 87.0% |
| 3921879 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.64 | 45.0 | 3.86e-01 | 100.0% | 46.3% |
| 3288866 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 52.0 | 4.96e-01 | 94.1% | 75.0% |
| 4030767 | 3504.1.1.1 ↗ | beta barrels › MutM N-terminal domain-like › Hypothetical protein YojF › Hypothetical protein YojF › DUF1806 | 0.63 | 53.0 | 5.11e-01 | 94.1% | 92.5% |
| 4022153 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.63 | 49.0 | 4.35e-01 | 92.2% | 58.6% |
| 5009635 | 3534.1.1.5 ↗ | beta barrels › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › DUF1854 | 0.62 | 37.0 | 4.22e-01 | 73.5% | 80.0% |
| 3264377 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.61 | 49.0 | 4.64e-01 | 87.3% | 72.5% |
| 3414375 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 48.0 | 4.44e-01 | 99.0% | 67.2% |
| 4966131 | 4.1.3.1 ↗ | beta barrels › SH3 › SH3 › Calcium-binding protein CcbP › Calci_bind_CcbP | 0.60 | 44.0 | 4.31e-01 | 100.0% | 70.9% |
| 5051313 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 37.0 | 4.44e-01 | 92.2% | 96.9% |
| 3269549 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 45.0 | 3.99e-01 | 87.3% | 54.2% |
| 5069121 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.59 | 36.0 | 4.23e-01 | 81.4% | 100.0% |
| 3391867 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 47.0 | 4.30e-01 | 88.2% | 65.2% |
| 3935052 | 220.1.1.2 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 | 0.59 | 52.0 | 4.83e-01 | 99.0% | 76.9% |
| 5032977 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 37.0 | 4.12e-01 | 92.2% | 82.5% |
| 3281618 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.56 | 40.0 | 4.12e-01 | 92.2% | 78.0% |
| 3866907 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.55 | 39.0 | 4.25e-01 | 91.2% | 89.4% |
| 3687023 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 49.0 | 4.95e-01 | 100.0% | 100.0% |
| 3267804 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 44.0 | 4.52e-01 | 89.2% | 90.0% |
| 3613205 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.51 | 42.0 | 3.20e-01 | 92.2% | 36.9% |