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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00257
Bact-VirSR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00257
Identity
- Kingdom:
- phage
Quality
85.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-214
Domain cluster:
rep: IMGVR_UViG_3300039190_000305-3300039190-Ga0399989_003201_3_1937__D82-97_167-336
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02518.32 best | HATPase_c | 27.5 | 5.20e-06 | 80.8% | 64.0% |
D2
high
residues 541-655
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lciA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 41.0 | 3.91e-01 | 70.4% | 90.3% |
| 3zl8A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.59 | 52.0 | 4.16e-01 | 96.5% | 95.6% |
| 3fxaA00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.59 | 40.0 | 3.44e-01 | 70.4% | 70.2% |
| 2onsA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 39.0 | 3.65e-01 | 70.4% | 70.6% |
| 4jwoA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 39.0 | 3.65e-01 | 70.4% | 72.3% |
| 4p1zA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 39.0 | 3.78e-01 | 70.4% | 86.6% |
| 4ombA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 38.0 | 3.45e-01 | 70.4% | 71.4% |
| 1gqyB02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.55 | 46.0 | 3.78e-01 | 91.3% | 91.7% |
| 1ixhA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 36.0 | 3.32e-01 | 70.4% | 74.2% |
| 2k6vA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 45.0 | 3.98e-01 | 93.9% | 86.6% |
| 5irmC01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 39.0 | 3.21e-01 | 79.1% | 90.9% |
| 1y7pB02 | 3.40.50.10550 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein af1403; domain 2 | 0.52 | 38.0 | 3.58e-01 | 74.8% | 94.9% |
| 1n8jA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 45.0 | 3.92e-01 | 98.3% | 76.3% |
| 1brmA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 36.0 | 3.33e-01 | 70.4% | 98.7% |
| 8a6tB01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 44.0 | 4.16e-01 | 95.7% | 77.9% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4994273 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.66 | 45.0 | 3.49e-01 | 70.4% | 81.2% |
| 3931144 | 2004.1.1.51 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_1 | 0.61 | 52.0 | 3.88e-01 | 92.2% | 65.3% |
| 5063868 | 2004.1.1.101 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MeaB | 0.61 | 46.0 | 3.51e-01 | 80.0% | 71.1% |
| 4054878 | 2007.1.13.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase | 0.59 | 40.0 | 3.61e-01 | 70.4% | 88.1% |
| 3614146 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 41.0 | 3.35e-01 | 71.3% | 90.5% |
| 4512587 | 2011.2.1.6 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › tRNA_deacylase | 0.57 | 39.0 | 3.33e-01 | 70.4% | 95.3% |
| 4628696 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.56 | 49.0 | 3.90e-01 | 93.0% | 90.9% |
| 4614219 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.56 | 50.0 | 3.95e-01 | 97.4% | 92.6% |
| 3510049 | 2004.1.1.286 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TraG-D_C | 0.53 | 37.0 | 2.50e-01 | 72.2% | 89.7% |
| 3598082 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.53 | 46.0 | 3.54e-01 | 94.8% | 77.4% |
| 168923 | 2485.1.1.12 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC | 0.53 | 45.0 | 3.98e-01 | 93.9% | 86.6% |
D3
high
residues 658-784
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e1dA02 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.62 | 40.0 | 4.75e-01 | 81.9% | 97.6% |
| 1tqgA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.62 | 37.0 | 4.04e-01 | 77.2% | 71.4% |
| 2juaA00 | 1.20.1480.30 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Designed four-helix bundle protein | 0.58 | 37.0 | 4.06e-01 | 80.3% | 79.4% |
| 4n4gA01 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.55 | 35.0 | 3.71e-01 | 78.0% | 72.1% |
| 4uyeA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.54 | 37.0 | 3.90e-01 | 78.7% | 78.9% |
| 1f68A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.54 | 36.0 | 3.91e-01 | 77.2% | 82.5% |
| 3bt5A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 39.0 | 3.69e-01 | 76.4% | 98.7% |
| 6nmnA02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.53 | 35.0 | 3.57e-01 | 76.4% | 68.0% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.52 | 39.0 | 3.87e-01 | 100.0% | 73.9% |
| 3g9gA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.52 | 38.0 | 3.04e-01 | 76.4% | 76.0% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.51 | 31.0 | 3.51e-01 | 74.8% | 85.1% |
| 3o6xA02 | 1.20.120.1560 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.50 | 40.0 | 3.83e-01 | 85.8% | 89.9% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3615393 | 632.6.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit | 0.68 | 43.0 | 4.86e-01 | 78.7% | 84.2% |
| 3967073 | 601.3.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain | 0.58 | 36.0 | 3.70e-01 | 76.4% | 63.3% |
| 3317246 | 611.3.1.0 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.52 | 30.0 | 3.26e-01 | 95.3% | 65.5% |
| 3449442 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.51 | 38.0 | 4.10e-01 | 77.2% | 100.0% |
| 4217710 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.51 | 37.0 | 3.59e-01 | 74.8% | 96.6% |
| 4528489 | 633.2.1.0 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein | 0.51 | 31.0 | 3.48e-01 | 73.2% | 78.9% |
| 3423999 | 601.1.2.74 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Rx_N | 0.50 | 38.0 | 3.68e-01 | 78.7% | 72.1% |
D4
medium
residues 241-364
Domain cluster:
rep: DGJ7_scaffold_2_2069_prodigal-single.1__X__X__00035__D226-373
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1z5bB03 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.63 | 47.0 | 4.44e-01 | 77.4% | 85.2% |
| 4ipeB02 | 3.30.230.80 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.59 | 53.0 | 4.80e-01 | 98.4% | 97.0% |
| 3hcyA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.53 | 37.0 | 3.56e-01 | 72.6% | 95.9% |
| 4hy1A02 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.51 | 44.0 | 4.10e-01 | 96.0% | 75.9% |
| 1t3aA00 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.51 | 46.0 | 3.21e-01 | 100.0% | 33.0% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3557551 | 212.1.1.24 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 | 0.68 | 54.0 | 5.37e-01 | 88.7% | 80.8% |
| 5017955 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.63 | 50.0 | 4.87e-01 | 84.7% | 83.0% |
| 3246869 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.62 | 53.0 | 4.30e-01 | 93.5% | 51.7% |
| 5018928 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.62 | 52.0 | 5.12e-01 | 95.2% | 84.4% |
| 4151824 | 212.1.1.1 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 | 0.60 | 52.0 | 4.86e-01 | 95.2% | 96.1% |
| 3282393 | 212.1.1.1 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 | 0.60 | 48.0 | 4.60e-01 | 92.7% | 73.8% |
| 4289958 | 212.1.1.1 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 | 0.59 | 52.0 | 4.84e-01 | 97.6% | 76.1% |
| 3487862 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.59 | 49.0 | 3.96e-01 | 90.3% | 52.9% |
| 2123278 | 212.1.1.1 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 | 0.58 | 50.0 | 4.58e-01 | 92.7% | 90.7% |
| 3968852 | 212.1.1.1 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 | 0.58 | 51.0 | 4.80e-01 | 95.2% | 98.7% |
| 1549467 | 212.1.1.1 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 | 0.58 | 52.0 | 4.96e-01 | 98.4% | 95.1% |
| 2323907 | 212.1.1.24 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 | 0.57 | 48.0 | 3.98e-01 | 91.1% | 55.1% |
| 3869716 | 212.1.1.24 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 | 0.57 | 48.0 | 4.53e-01 | 91.1% | 82.0% |
| 4930685 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.57 | 45.0 | 4.10e-01 | 83.1% | 73.8% |
| 3358676 | 212.1.1.1 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 | 0.57 | 50.0 | 4.53e-01 | 97.6% | 97.1% |
| 3310887 | 212.1.1.24 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 | 0.55 | 46.0 | 4.65e-01 | 100.0% | 90.4% |
| 3223062 | 212.1.1.1 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 | 0.55 | 49.0 | 4.48e-01 | 96.8% | 98.1% |
| 4094312 | 212.1.1.1 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 | 0.54 | 48.0 | 4.48e-01 | 96.8% | 96.8% |
| 5078889 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 42.0 | 4.20e-01 | 87.1% | 96.0% |
D5
medium
residues 414-467_510-528
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5k8bA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.61 | 42.0 | 3.01e-01 | 74.0% | 69.1% |
| 4fuqC01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.58 | 40.0 | 2.57e-01 | 72.6% | 42.0% |
| 7ntgA01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.58 | 45.0 | 3.47e-01 | 84.9% | 80.8% |
| 1vp4A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.58 | 39.0 | 2.87e-01 | 72.6% | 63.8% |
| 6joaA03 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.56 | 43.0 | 3.45e-01 | 84.9% | 83.3% |
| 2nxwA01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.55 | 39.0 | 3.02e-01 | 76.7% | 86.1% |
| 3h11A00 | 3.40.50.1460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 41.0 | 3.04e-01 | 84.9% | 69.8% |
| 1vb5B02 | 3.40.50.10470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 | 0.54 | 41.0 | 3.15e-01 | 84.9% | 87.8% |
| 5ahkA01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.54 | 38.0 | 2.95e-01 | 76.7% | 91.3% |
| 3hwwA01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.53 | 37.0 | 2.79e-01 | 74.0% | 81.4% |
| 4w4tB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 40.0 | 2.59e-01 | 83.6% | 63.0% |
| 3qufA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 39.0 | 3.18e-01 | 83.6% | 84.0% |
| 1q35A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 40.0 | 3.32e-01 | 86.3% | 84.2% |
| 3gnlA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 36.0 | 2.84e-01 | 71.2% | 86.1% |
| 3eyaH01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.52 | 37.0 | 2.88e-01 | 76.7% | 89.9% |
| 2goyA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 40.0 | 2.96e-01 | 89.0% | 72.5% |
| 3qldA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.51 | 36.0 | 2.65e-01 | 76.7% | 80.1% |
| 6em3x01 | 3.40.50.10480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain | 0.51 | 40.0 | 3.06e-01 | 87.7% | 89.7% |
| 3evnA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 38.0 | 3.36e-01 | 82.2% | 99.1% |
| 5f7vA00 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 39.0 | 2.51e-01 | 84.9% | 74.5% |
| 6znjB01 | 3.40.50.10950 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 38.0 | 3.16e-01 | 84.9% | 77.4% |
| 2zskA02 | 3.40.50.1860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 38.0 | 3.39e-01 | 83.6% | 87.3% |
| 2v25A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 40.0 | 3.64e-01 | 89.0% | 81.2% |
| 3a11B02 | 3.40.50.10470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 | 0.50 | 34.0 | 2.59e-01 | 71.2% | 94.4% |
| 4ezbA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 36.0 | 2.79e-01 | 78.1% | 78.5% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4209848 | 2004.1.1.108 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SulA | 0.59 | 41.0 | 3.34e-01 | 74.0% | 81.3% |
| 3307296 | 7512.1.1.33 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_41 | 0.58 | 46.0 | 3.71e-01 | 90.4% | 73.4% |
| 315908 | 2003.1.14.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Aspartate/ornithine carbamoyltransferase | 0.57 | 44.0 | 3.45e-01 | 86.3% | 71.1% |
| 3973939 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.56 | 44.0 | 3.16e-01 | 86.3% | 92.2% |
| 4993360 | 2003.1.14.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Aspartate/ornithine carbamoyltransferase › OTCace_N | 0.55 | 42.0 | 3.44e-01 | 84.9% | 64.0% |
| 3974059 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.55 | 42.0 | 3.75e-01 | 84.9% | 89.1% |
| 4944263 | 2003.1.14.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Aspartate/ornithine carbamoyltransferase › OTCace_N | 0.55 | 42.0 | 3.40e-01 | 84.9% | 66.0% |
| 3475530 | 7562.1.1.1 ↗ | a/b three-layered sandwiches › Thiamin pyrophosphokinase, catalytic domain › Thiamin pyrophosphokinase, catalytic domain › Thiamin pyrophosphokinase, catalytic domain › TPK_catalytic | 0.55 | 37.0 | 2.97e-01 | 71.2% | 84.5% |
| 4158563 | 2003.1.14.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Aspartate/ornithine carbamoyltransferase › OTCace_N | 0.54 | 42.0 | 3.27e-01 | 86.3% | 58.9% |
| 5029932 | 2007.1.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like | 0.54 | 42.0 | 3.05e-01 | 87.7% | 93.3% |
| 3652604 | 2007.9.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain | 0.53 | 45.0 | 3.42e-01 | 98.6% | 87.9% |
| 3423322 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.53 | 41.0 | 3.42e-01 | 84.9% | 83.8% |
| 3353265 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.53 | 41.0 | 2.98e-01 | 86.3% | 80.9% |
| 3841808 | 2007.1.6.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain | 0.53 | 40.0 | 3.58e-01 | 83.6% | 79.1% |
| 3644907 | 7590.1.1.2 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi | 0.53 | 36.0 | 3.25e-01 | 71.2% | 84.8% |
| 3273271 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.52 | 39.0 | 3.08e-01 | 83.6% | 64.7% |
| 3265430 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.52 | 40.0 | 2.73e-01 | 86.3% | 42.7% |
| 2807495 | 7577.1.1.7 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Cys_Met_Meta_PP | 0.52 | 36.0 | 2.52e-01 | 74.0% | 46.9% |
| 3978732 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.52 | 39.0 | 3.04e-01 | 84.9% | 53.5% |
| 4937009 | 2007.6.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain | 0.52 | 39.0 | 3.29e-01 | 86.3% | 93.8% |
| 3720675 | 2003.1.11.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like | 0.52 | 40.0 | 3.30e-01 | 84.9% | 87.1% |
| 983549 | 2003.1.14.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Aspartate/ornithine carbamoyltransferase › OTCace_N | 0.52 | 39.0 | 3.34e-01 | 83.6% | 60.6% |
| 3594868 | 2007.1.10.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › PrpR receptor domain-like | 0.52 | 38.0 | 3.67e-01 | 79.5% | 70.6% |
| 1070869 | 2007.2.4.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphoinositide phosphatase | 0.52 | 40.0 | 3.05e-01 | 86.3% | 87.0% |
| 5022480 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.52 | 40.0 | 3.77e-01 | 86.3% | 92.2% |
| 3386717 | 7558.1.1.8 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › DUF374 | 0.52 | 38.0 | 2.91e-01 | 83.6% | 69.3% |
| 4339124 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.52 | 37.0 | 3.90e-01 | 82.2% | 95.0% |
| 4085516 | 2003.1.8.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › MurCD/PglD N-terminal domain-like › MurD-like_N | 0.51 | 40.0 | 3.58e-01 | 83.6% | 86.0% |
| 4546610 | 2003.1.8.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › MurCD/PglD N-terminal domain-like | 0.51 | 37.0 | 3.38e-01 | 76.7% | 92.0% |
| 3173922 | 2007.2.3.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase2 | 0.51 | 39.0 | 3.05e-01 | 83.6% | 51.8% |
| 5033605 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.51 | 38.0 | 3.39e-01 | 83.6% | 82.6% |
| 5049584 | 2007.1.3.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Oxidored_q6 | 0.51 | 38.0 | 3.32e-01 | 84.9% | 91.2% |
| 4506940 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.51 | 38.0 | 2.91e-01 | 83.6% | 63.2% |
| 3669524 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.51 | 38.0 | 2.87e-01 | 84.9% | 49.5% |
| 3622456 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.51 | 37.0 | 3.32e-01 | 80.8% | 53.6% |
| 4431526 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.50 | 38.0 | 3.67e-01 | 86.3% | 92.2% |
| 4323933 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.50 | 38.0 | 3.26e-01 | 84.9% | 58.5% |
| 4547476 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.50 | 38.0 | 3.03e-01 | 86.3% | 44.1% |
| 4333564 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.50 | 34.0 | 3.22e-01 | 78.1% | 55.8% |
| 4049418 | 2003.1.8.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › MurCD/PglD N-terminal domain-like › MurD-like_N | 0.50 | 35.0 | 3.25e-01 | 75.3% | 92.0% |
| 4084892 | 4978.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in AF0625-like proteins › a/b domain in AF0625-like proteins › a/b domain in AF0625-like proteins › tRNA_deacylase | 0.50 | 37.0 | 3.52e-01 | 83.6% | 96.8% |
| 3276002 | 2003.4.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes | 0.50 | 38.0 | 3.00e-01 | 87.7% | 52.8% |