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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00258

Bact-Vir

SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00258

Identity

Kingdom:
phage

Quality

84.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 84-169
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wjqA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.78 71.0 5.31e-01 100.0% 62.9%
7vu0A01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.75 65.0 4.06e-01 91.9% 34.7%
3efmA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.75 61.0 3.77e-01 84.9% 20.4%
1fepA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.75 62.0 3.72e-01 87.2% 16.7%
5dl7A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.75 61.0 3.87e-01 87.2% 21.9%
3jtyB01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.74 61.0 3.89e-01 87.2% 22.4%
2f1cX00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.72 65.0 4.66e-01 100.0% 52.4%
4zboC00 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.72 60.0 4.27e-01 90.7% 70.6%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.70 42.0 4.81e-01 72.1% 82.5%
1a0sP00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.69 62.0 3.91e-01 97.7% 48.2%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 62.0 4.99e-01 98.8% 67.7%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 51.0 4.27e-01 100.0% 45.8%
1wpuA00 3.40.1510.10 Alpha Beta › 3-Layer(aba) Sandwich › Hut operon positive regulatory protein HutP › Hut operon regulatory protein HutP 0.68 50.0 4.13e-01 76.7% 100.0%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.68 56.0 4.56e-01 88.4% 59.4%
6secA03 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.67 60.0 4.18e-01 100.0% 86.6%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.67 40.0 4.58e-01 75.6% 85.0%
3robA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 54.0 4.65e-01 88.4% 80.9%
1pu4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.65 50.0 3.21e-01 81.4% 21.1%
3pgbA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.65 51.0 3.18e-01 84.9% 34.6%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 55.0 4.40e-01 91.9% 85.0%
2ervA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.65 57.0 4.77e-01 97.7% 66.7%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.64 48.0 4.51e-01 97.7% 64.2%
2obdA01 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.64 55.0 3.88e-01 96.5% 47.0%
6obtA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.64 50.0 3.51e-01 83.7% 42.2%
4l8oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 52.0 4.24e-01 89.5% 68.3%
4pn0C00 3.20.100.10 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like 0.64 47.0 3.33e-01 77.9% 44.1%
1idpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 52.0 4.36e-01 89.5% 84.4%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 53.0 4.45e-01 93.0% 85.1%
1vprA03 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 57.0 4.66e-01 100.0% 85.4%
1q40D00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 52.0 4.07e-01 88.4% 85.1%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.63 47.0 4.26e-01 97.7% 58.5%
3nv0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 51.0 3.87e-01 88.4% 79.6%
1ewfA02 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.61 52.0 3.69e-01 95.3% 47.5%
3ub1A01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 48.0 4.17e-01 87.2% 77.2%
3f7xA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 48.0 4.22e-01 90.7% 57.9%
3kg7B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.60 51.0 3.60e-01 96.5% 89.8%
3sy9C01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.59 53.0 3.53e-01 100.0% 47.9%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.59 47.0 3.91e-01 100.0% 49.3%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 4.17e-01 88.4% 83.5%
7bwcA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 38.0 2.58e-01 76.7% 18.3%
2gr7A00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.57 44.0 4.25e-01 90.7% 72.3%
1a2vA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.56 49.0 3.17e-01 100.0% 78.1%
4ba0A04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 46.0 3.75e-01 87.2% 88.6%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 48.0 3.80e-01 97.7% 54.3%
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.56 43.0 3.83e-01 82.6% 86.3%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.54 42.0 3.25e-01 84.9% 94.4%
1avgI00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 47.0 3.97e-01 96.5% 64.8%
5jenA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.53 41.0 3.82e-01 84.9% 84.7%
1lshA04 2.20.80.10 Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex, chain A, domain 4 › Lipovitellin-phosvitin complex, chain A, domain 4 0.52 41.0 2.99e-01 87.2% 79.3%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.51 40.0 3.61e-01 84.9% 84.0%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3352673 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.82 75.0 4.94e-01 100.0% 35.8%
3270444 331.3.1.6 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.79 67.0 5.16e-01 90.7% 47.2%
3250241 331.3.1.6 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.78 65.0 4.97e-01 88.4% 44.3%
4005087 5084.5.1.8 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.78 72.0 5.16e-01 100.0% 59.7%
3966665 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.78 64.0 3.98e-01 87.2% 20.0%
4009827 5084.5.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.76 70.0 4.47e-01 100.0% 28.7%
3965241 5084.5.4.5 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.76 69.0 4.66e-01 100.0% 84.2%
4371295 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.76 60.0 3.61e-01 82.6% 17.5%
3974137 5084.5.1.69 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › B-barrel_PelB_C 0.75 67.0 4.54e-01 100.0% 27.0%
3803010 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.75 69.0 4.85e-01 100.0% 37.6%
3942551 5084.5.2.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.75 63.0 3.97e-01 90.7% 58.0%
1734925 5084.5.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.75 61.0 3.87e-01 87.2% 21.9%
3288669 331.3.1.27 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.74 60.0 4.80e-01 86.0% 46.3%
3740523 331.3.1.6 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.73 66.0 5.25e-01 100.0% 51.5%
3379458 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.73 65.0 4.32e-01 98.8% 87.9%
3968681 5084.5.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.72 62.0 3.91e-01 93.0% 45.1%
3391818 3070.2.1.0 ↗ a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain 0.71 58.0 5.51e-01 86.0% 81.8%
3465157 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.71 63.0 4.12e-01 97.7% 72.2%
3890886 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.71 50.0 5.23e-01 73.3% 83.7%
4537321 5084.1.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity 0.71 63.0 4.91e-01 97.7% 52.2%
3788774 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.71 57.0 4.69e-01 84.9% 50.3%
3875809 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.70 58.0 4.58e-01 87.2% 49.7%
5009761 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.70 53.0 4.45e-01 88.4% 47.6%
1112109 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.70 63.0 4.63e-01 100.0% 63.0%
3944979 5084.5.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 0.70 63.0 4.68e-01 100.0% 60.5%
3255874 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.70 57.0 4.32e-01 87.2% 40.5%
4955671 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.70 45.0 4.71e-01 80.2% 71.2%
4321969 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.69 55.0 4.46e-01 86.0% 79.4%
3588483 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.69 55.0 4.78e-01 87.2% 79.1%
3218632 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.68 54.0 5.23e-01 84.9% 76.6%
3526427 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.68 61.0 4.03e-01 98.8% 85.2%
3228242 4210.1.1.1 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.67 43.0 4.10e-01 75.6% 56.0%
4447762 9.1.1.12 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.66 61.0 4.89e-01 100.0% 59.7%
3969139 5084.5.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.66 57.0 3.63e-01 96.5% 64.0%
3534691 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.66 54.0 4.30e-01 87.2% 49.7%
3318131 9.3.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › DUF2921_N 0.66 59.0 4.73e-01 98.8% 61.2%
3840054 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.65 58.0 4.91e-01 97.7% 76.4%
3663259 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.65 49.0 4.20e-01 88.4% 50.4%
3716267 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.65 60.0 3.95e-01 100.0% 65.9%
4296505 5084.5.1.52 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › SlpA_C 0.65 58.0 3.86e-01 100.0% 25.3%
4002608 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.65 57.0 4.11e-01 100.0% 56.4%
4016448 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.65 53.0 4.48e-01 89.5% 86.2%
3962739 243.1.1.77 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.64 51.0 4.24e-01 84.9% 69.3%
3438237 12.3.1.2 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Cu_amine_oxid 0.64 50.0 3.66e-01 84.9% 73.9%
3278632 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.64 53.0 4.54e-01 89.5% 82.2%
1094951 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.64 52.0 4.24e-01 89.5% 68.3%
3253396 868.1.1.2 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA_triPase 0.64 48.0 3.55e-01 77.9% 57.6%
4479712 243.1.1.3 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Scytalone_dh 0.64 53.0 4.16e-01 90.7% 82.8%
3069457 1053.1.1.0 ↗ beta barrels › Factor H-binding protein (fHbp) N-terminal beta-barrel domain › Factor H-binding protein (fHbp) N-terminal beta-barrel domain › Factor H-binding protein (fHbp) N-terminal beta-barrel domain 0.63 40.0 4.75e-01 72.1% 96.5%
3252530 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.63 57.0 3.81e-01 96.5% 64.9%
5037955 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 51.0 3.46e-01 89.5% 23.8%
3283278 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.63 51.0 4.45e-01 89.5% 85.2%
3453561 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.63 49.0 3.52e-01 83.7% 74.3%
3818630 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.63 50.0 3.93e-01 84.9% 45.7%
3732871 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.63 51.0 4.10e-01 90.7% 78.7%
3229111 243.1.1.40 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NXF_NTF2 0.62 50.0 3.80e-01 88.4% 76.1%
3339476 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.61 49.0 3.81e-01 84.9% 43.3%
1413889 274.1.1.5 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor 0.60 47.0 4.65e-01 89.5% 79.1%
3764790 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 48.0 4.70e-01 88.4% 87.4%
3926039 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 48.0 4.59e-01 88.4% 76.0%
5083090 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 46.0 3.23e-01 89.5% 24.7%
3924939 4210.1.1.1 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.58 45.0 4.12e-01 88.4% 62.6%
3625919 9.1.1.12 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.58 50.0 4.05e-01 100.0% 51.7%
3832952 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.58 46.0 3.78e-01 87.2% 52.5%
3482138 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 46.0 2.73e-01 87.2% 33.5%
3334482 9.23.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.55 46.0 3.83e-01 100.0% 69.1%
3646327 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 45.0 3.78e-01 100.0% 73.8%
3840079 4998.1.1.1 ↗ beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.53 45.0 3.82e-01 97.7% 64.7%
3952161 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.52 39.0 3.25e-01 80.2% 68.1%