←Back to structures
SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00263
Bact-VirSR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00263
Identity
- Kingdom:
- phage
Quality
74.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-79
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1w4sA00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.71 | 58.0 | 4.70e-01 | 89.6% | 65.1% |
| 1ne8A00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 58.0 | 5.03e-01 | 90.9% | 80.2% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 55.0 | 5.70e-01 | 89.6% | 93.1% |
| 1m1fB00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 55.0 | 4.97e-01 | 88.3% | 81.9% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.67 | 50.0 | 5.43e-01 | 87.0% | 96.8% |
| 7oc3A01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 59.0 | 5.56e-01 | 100.0% | 84.8% |
| 3e1sA04 | 2.30.30.940 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 47.0 | 4.98e-01 | 92.2% | 87.0% |
| 1n27A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 47.0 | 4.35e-01 | 92.2% | 63.5% |
| 1whlA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.62 | 54.0 | 5.07e-01 | 96.1% | 92.6% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 46.0 | 5.00e-01 | 85.7% | 100.0% |
| 1lomA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.59 | 32.0 | 2.93e-01 | 93.5% | 37.6% |
| 3mg1B02 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 44.0 | 3.86e-01 | 84.4% | 84.8% |
| 3eliA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 43.0 | 3.55e-01 | 92.2% | 44.4% |
| 1lvoA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 38.0 | 3.64e-01 | 96.1% | 61.4% |
| 1q6wG00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 42.0 | 3.48e-01 | 88.3% | 98.0% |
| 1lm4A00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.52 | 44.0 | 3.38e-01 | 97.4% | 63.7% |
| 2xklA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 43.0 | 3.55e-01 | 94.8% | 71.8% |
| 2bvbA00 | 2.60.120.710 | Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 | 0.52 | 43.0 | 3.69e-01 | 97.4% | 81.8% |
| 2as9B01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 37.0 | 3.41e-01 | 94.8% | 58.4% |
| 2jzlA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.50 | 40.0 | 3.56e-01 | 87.0% | 89.2% |
| 1o97C00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.50 | 43.0 | 3.08e-01 | 98.7% | 59.4% |
| 1wi1A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 40.0 | 3.58e-01 | 88.3% | 77.5% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3999482 | 4.1.1.311 ↗ | beta barrels › SH3 › SH3 › SH3 › BRWD_AD | 0.74 | 64.0 | 5.65e-01 | 94.8% | 88.2% |
| 3540253 | 4.1.1.78 ↗ | beta barrels › SH3 › SH3 › SH3 › TTD | 0.73 | 67.0 | 6.21e-01 | 100.0% | 83.2% |
| 3931053 | 4.25.1.2 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD | 0.73 | 63.0 | 5.71e-01 | 93.5% | 99.0% |
| 3415831 | 4.25.1.2 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD | 0.71 | 61.0 | 5.29e-01 | 94.8% | 85.8% |
| 3605922 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 60.0 | 5.51e-01 | 93.5% | 87.0% |
| 3935507 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 57.0 | 5.27e-01 | 90.9% | 75.0% |
| 3597002 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 59.0 | 5.22e-01 | 93.5% | 77.3% |
| 5062749 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.68 | 57.0 | 4.95e-01 | 89.6% | 80.7% |
| 5027789 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.68 | 56.0 | 5.13e-01 | 89.6% | 81.0% |
| 3932484 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 52.0 | 5.67e-01 | 90.9% | 100.0% |
| 3215393 | 4.1.1.319 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 | 0.67 | 59.0 | 4.72e-01 | 97.4% | 68.7% |
| 3959531 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 55.0 | 5.69e-01 | 100.0% | 98.6% |
| 3924760 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 52.0 | 5.01e-01 | 90.9% | 73.3% |
| 4034169 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.67 | 57.0 | 4.57e-01 | 92.2% | 66.0% |
| 3416672 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 60.0 | 5.51e-01 | 100.0% | 78.0% |
| 4022025 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.66 | 57.0 | 4.62e-01 | 94.8% | 91.0% |
| 3170251 | 4.1.1.170 ↗ | beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind | 0.66 | 58.0 | 4.74e-01 | 97.4% | 75.0% |
| 3713571 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 55.0 | 4.99e-01 | 93.5% | 88.6% |
| 2410381 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.65 | 55.0 | 5.47e-01 | 92.2% | 92.4% |
| 5072932 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.64 | 47.0 | 5.31e-01 | 83.1% | 100.0% |
| 3842631 | 4.1.1.243 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa | 0.64 | 46.0 | 4.78e-01 | 87.0% | 81.4% |
| 3887433 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 49.0 | 4.33e-01 | 84.4% | 100.0% |
| 3886492 | 4.1.1.154 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4772 | 0.63 | 49.0 | 4.97e-01 | 88.3% | 85.3% |
| None | — | 0.63 | 55.0 | 3.47e-01 | 96.1% | 21.8% | |
| 4377781 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.63 | 54.0 | 5.40e-01 | 97.4% | 98.8% |
| 4251101 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 56.0 | 5.41e-01 | 97.4% | 91.8% |
| 3251420 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 50.0 | 4.79e-01 | 89.6% | 81.1% |
| 3425872 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.60 | 51.0 | 4.87e-01 | 92.2% | 93.3% |
| 3237640 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.60 | 53.0 | 4.75e-01 | 100.0% | 70.9% |
| 3765502 | 4.1.1.50 ↗ | beta barrels › SH3 › SH3 › SH3 › MIB_HERC2 | 0.57 | 47.0 | 4.31e-01 | 90.9% | 72.0% |
| 4180654 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.56 | 39.0 | 3.31e-01 | 75.3% | 63.4% |
| 5042869 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.56 | 40.0 | 4.34e-01 | 85.7% | 90.8% |
| 3936442 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 43.0 | 3.95e-01 | 85.7% | 80.0% |
| 3965564 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.54 | 37.0 | 3.41e-01 | 72.7% | 86.7% |
| 3922964 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.52 | 44.0 | 2.82e-01 | 96.1% | 52.5% |
| 3700528 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 39.0 | 3.41e-01 | 83.1% | 72.8% |
| 4587404 | 222.2.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Insertion domain in thioesterase › Insertion domain in thioesterase | 0.52 | 40.0 | 3.77e-01 | 87.0% | 94.0% |
| 4036369 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.51 | 35.0 | 3.27e-01 | 72.7% | 83.8% |
| 3258480 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.51 | 43.0 | 2.94e-01 | 94.8% | 91.0% |
| 2029638 | 71.2.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › EipB_like | 0.51 | 42.0 | 3.03e-01 | 93.5% | 39.3% |
| 3198924 | 6.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil | 0.50 | 43.0 | 3.33e-01 | 100.0% | 98.4% |