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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00283
Bact-VirSR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00283
Identity
- Kingdom:
- phage
Quality
94.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 2-101
Domain cluster:
rep: BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00331__D2-94
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3otdA00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.66 | 49.0 | 3.72e-01 | 78.0% | 83.3% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.60 | 40.0 | 4.42e-01 | 73.0% | 89.5% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 41.0 | 4.52e-01 | 76.0% | 93.4% |
| 1yk9A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.52 | 36.0 | 3.00e-01 | 72.0% | 63.0% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002387 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.65 | 46.0 | 3.28e-01 | 74.0% | 96.8% |
| 5067865 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.62 | 41.0 | 4.66e-01 | 72.0% | 95.7% |
| 4969863 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.62 | 42.0 | 4.77e-01 | 76.0% | 94.7% |
| 4990637 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.60 | 41.0 | 4.42e-01 | 76.0% | 85.5% |
| 4996552 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.60 | 40.0 | 4.22e-01 | 73.0% | 80.0% |
| 4128974 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.59 | 42.0 | 4.61e-01 | 76.0% | 93.8% |
| 4057352 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.53 | 41.0 | 3.16e-01 | 86.0% | 83.5% |
| 3514788 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.53 | 37.0 | 2.91e-01 | 71.0% | 70.2% |
| 4948156 | 2004.5.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain | 0.53 | 47.0 | 3.56e-01 | 100.0% | 73.1% |
| 5007504 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.53 | 45.0 | 3.30e-01 | 93.0% | 88.3% |
| 5050481 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 34.0 | 3.02e-01 | 83.0% | 46.8% |
| 3289907 | 4123.1.1.2 ↗ | few secondary structure elements › E7 C-terminal domain-like › E7 C-terminal domain-like › E7 C-terminal domain-like › RepSA | 0.52 | 42.0 | 4.14e-01 | 87.0% | 83.6% |
| 3637444 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.52 | 41.0 | 3.05e-01 | 85.0% | 81.2% |
| 2831852 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.52 | 44.0 | 4.42e-01 | 100.0% | 95.0% |
| 3640841 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.51 | 45.0 | 2.99e-01 | 95.0% | 70.6% |
| 4013514 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.51 | 44.0 | 4.38e-01 | 99.0% | 93.3% |
| 2106285 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.51 | 44.0 | 4.38e-01 | 100.0% | 92.6% |
| 3512923 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 42.0 | 3.77e-01 | 89.0% | 94.3% |