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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00287
Bact-VirSR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00287
Identity
- Kingdom:
- phage
Quality
71.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 56-119
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tdqA00 | 2.40.50.320 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF | 0.62 | 51.0 | 4.54e-01 | 87.5% | 79.1% |
| 1vq8T00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 48.0 | 3.95e-01 | 100.0% | 46.2% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.60 | 48.0 | 4.84e-01 | 100.0% | 90.5% |
| 3agjF01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.59 | 54.0 | 4.25e-01 | 100.0% | 58.3% |
| 1zldA00 | 2.60.40.1920 | Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA | 0.56 | 43.0 | 3.77e-01 | 96.9% | 53.9% |
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.54 | 38.0 | 3.27e-01 | 100.0% | 44.4% |
| 8afoA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 35.0 | 3.22e-01 | 100.0% | 50.0% |
| 4xurA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 46.0 | 3.47e-01 | 100.0% | 45.3% |
| 2mamA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 43.0 | 3.63e-01 | 95.3% | 87.3% |
| 7k7jA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 44.0 | 3.79e-01 | 100.0% | 58.3% |
| 2yzjA01 | 2.70.40.10 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) | 0.52 | 35.0 | 2.88e-01 | 100.0% | 32.9% |
| 4e98C00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 44.0 | 3.81e-01 | 100.0% | 82.9% |
| 2kcaA00 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.51 | 42.0 | 3.71e-01 | 100.0% | 67.9% |
| 4fnfA00 | 2.40.50.50 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 43.0 | 3.78e-01 | 95.3% | 99.0% |
| 1d6uA03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.51 | 39.0 | 2.52e-01 | 92.2% | 76.6% |
| 1n9pA00 | 2.60.40.1400 | Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 | 0.51 | 44.0 | 3.17e-01 | 100.0% | 40.6% |
| 2v1qA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 40.0 | 4.15e-01 | 100.0% | 96.7% |
| 8bveA03 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.50 | 33.0 | 3.27e-01 | 100.0% | 61.1% |
| 4gwmA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 40.0 | 3.10e-01 | 100.0% | 36.0% |
| 1dbhA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 41.0 | 3.39e-01 | 96.9% | 60.9% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3363751 | 4.1.1.246 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin | 0.64 | 58.0 | 4.87e-01 | 100.0% | 81.9% |
| 3315510 | 4.1.1.246 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin | 0.64 | 58.0 | 4.78e-01 | 100.0% | 78.2% |
| 3843359 | 4.1.1.246 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin | 0.62 | 56.0 | 5.12e-01 | 100.0% | 75.3% |
| 4879695 | 1.1.13.29 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_gp28 | 0.58 | 50.0 | 4.03e-01 | 100.0% | 57.6% |
| 4020558 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 46.0 | 4.66e-01 | 100.0% | 87.7% |
| 3599257 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 47.0 | 4.70e-01 | 96.9% | 90.8% |
| 3649347 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.56 | 44.0 | 3.45e-01 | 100.0% | 38.6% |
| None | — | 0.54 | 47.0 | 3.36e-01 | 100.0% | 52.0% | |
| 3797581 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 46.0 | 3.48e-01 | 96.9% | 53.8% |
| 4160951 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.54 | 47.0 | 3.22e-01 | 100.0% | 28.9% |
| 3548439 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.54 | 47.0 | 3.58e-01 | 100.0% | 53.5% |
| 3484618 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.54 | 47.0 | 4.47e-01 | 98.4% | 82.7% |
| 3636985 | 11.1.1.416 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › SPC22 | 0.54 | 47.0 | 3.42e-01 | 100.0% | 48.3% |
| 4034130 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.53 | 43.0 | 3.84e-01 | 96.9% | 74.0% |
| 4186200 | 10.32.1.8 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 | 0.53 | 46.0 | 3.39e-01 | 100.0% | 41.7% |
| 3513020 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 45.0 | 3.85e-01 | 100.0% | 62.7% |
| 3508657 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.52 | 45.0 | 3.20e-01 | 100.0% | 40.5% |
| 3438031 | 2492.1.1.8 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 | 0.52 | 44.0 | 3.13e-01 | 98.4% | 33.0% |
| 3378824 | 4210.1.1.2 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › PHL | 0.51 | 43.0 | 3.95e-01 | 100.0% | 95.5% |
| 3619872 | 221.1.1.99 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UCH | 0.51 | 43.0 | 2.60e-01 | 95.3% | 23.7% |
| 3507788 | 11.1.1.76 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GMP_PDE_delta | 0.51 | 45.0 | 3.40e-01 | 100.0% | 46.5% |
| 3414535 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.51 | 45.0 | 3.25e-01 | 100.0% | 37.8% |
| 4396355 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.51 | 40.0 | 3.75e-01 | 100.0% | 68.2% |
| 3575735 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.51 | 42.0 | 3.59e-01 | 100.0% | 90.0% |
| 4981984 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 42.0 | 3.67e-01 | 100.0% | 60.0% |
| 3932049 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.51 | 44.0 | 3.26e-01 | 100.0% | 42.9% |
| 3622909 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 42.0 | 3.55e-01 | 100.0% | 90.0% |
| 3601949 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 43.0 | 3.40e-01 | 100.0% | 68.3% |
| 3611968 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 45.0 | 4.26e-01 | 98.4% | 93.3% |