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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00293
Bact-VirSR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00293
Identity
- Kingdom:
- phage
Quality
90.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 45-97
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zheA02 | 1.25.40.760 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.77 | 62.0 | 4.13e-01 | 88.7% | 67.1% |
| 4ljyA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 53.0 | 3.68e-01 | 84.9% | 93.7% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.58 | 51.0 | 4.27e-01 | 100.0% | 84.0% |
| 3do6A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 47.0 | 2.93e-01 | 100.0% | 82.3% |
| 4k3bA03 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.50 | 44.0 | 3.72e-01 | 100.0% | 82.6% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3995952 | 633.23.1.4 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 | 0.78 | 60.0 | 4.25e-01 | 84.9% | 46.9% |
| 4021088 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.76 | 48.0 | 3.47e-01 | 100.0% | 24.5% |
| 3402544 | 137.1.1.12 ↗ | alpha bundles › A DNA-binding domain in eukaryotic transcription factors › A DNA-binding domain in eukaryotic transcription factors › A DNA-binding domain in eukaryotic transcription factors › SCHIP-1_C | 0.72 | 66.0 | 5.35e-01 | 100.0% | 56.8% |
| 3643738 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.68 | 50.0 | 3.39e-01 | 100.0% | 22.1% |
| 3701882 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.67 | 51.0 | 4.15e-01 | 94.3% | 45.3% |
| 3496865 | 6054.1.1.1 ↗ | alpha arrays › C-terminus of TFIIE alpha › C-terminus of TFIIE alpha › C-terminus of TFIIE alpha › TFIIE-A_C | 0.61 | 44.0 | 4.67e-01 | 88.7% | 95.6% |
| 4105313 | 3541.1.1.1 ↗ | beta sandwiches › Atg29-Atg31 › Atg29-Atg31 › Atg29-Atg31 › ATG31 | 0.61 | 53.0 | 3.93e-01 | 96.2% | 92.6% |
| 4499580 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.61 | 52.0 | 3.31e-01 | 96.2% | 86.5% |
| 3450582 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.57 | 52.0 | 3.83e-01 | 100.0% | 63.1% |
| 3466249 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.57 | 52.0 | 3.35e-01 | 100.0% | 31.1% |
| 3655858 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.57 | 51.0 | 3.63e-01 | 100.0% | 45.2% |
| 4332382 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.54 | 45.0 | 3.50e-01 | 94.3% | 52.1% |
| 3459076 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.54 | 44.0 | 2.93e-01 | 100.0% | 29.0% |
| 3703253 | 7579.1.1.14 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 | 0.51 | 45.0 | 3.06e-01 | 100.0% | 55.9% |