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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00301

Bact-Vir

SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00301

Identity

Kingdom:
phage

Quality

85.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-118
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xu8A00 3.90.70.190 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Domain of unknown function (DUF5086) 0.60 34.0 3.42e-01 80.3% 53.4%
3rwxA02 2.40.128.350 Mainly Beta › Beta Barrel › Lipocalin › 0.59 31.0 3.03e-01 72.6% 45.5%
1ti2A01 2.20.25.340 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 21.0 2.69e-01 72.6% 50.0%
4i4kA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 30.0 2.82e-01 76.1% 43.5%
3dsmA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 36.0 2.64e-01 100.0% 25.7%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.52 23.0 3.09e-01 82.9% 80.7%
4o3vA00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.51 31.0 2.91e-01 74.4% 51.4%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3258377 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.56 29.0 3.28e-01 71.8% 63.3%
5080671 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.52 26.0 3.26e-01 74.4% 80.0%
3240083 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.49e-01 90.6% 55.4%