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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00309
Bact-VirSR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00309
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-89
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yzbA01 | 3.90.70.40 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.61 | 43.0 | 3.85e-01 | 100.0% | 52.4% |
| 2af5A01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.59 | 32.0 | 3.90e-01 | 76.4% | 87.0% |
| 3it8D01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.57 | 42.0 | 3.40e-01 | 79.8% | 94.4% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 37.0 | 4.15e-01 | 93.3% | 92.3% |
| 1kaxA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.56 | 32.0 | 3.87e-01 | 84.3% | 90.9% |
| 2yk0A03 | 1.20.58.1930 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 47.0 | 3.50e-01 | 93.3% | 57.3% |
| 6uzjA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 37.0 | 4.32e-01 | 94.4% | 100.0% |
| 2epdA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 36.0 | 3.86e-01 | 91.0% | 78.9% |
| 2ekhA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 34.0 | 3.64e-01 | 88.8% | 72.5% |
| 3loyA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 35.0 | 3.38e-01 | 74.2% | 58.4% |
| 7oiyA01 | 3.90.70.130 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.53 | 43.0 | 3.31e-01 | 93.3% | 86.1% |
| 2dmoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 36.0 | 3.98e-01 | 92.1% | 91.2% |
| 3nmzD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 40.0 | 4.12e-01 | 97.8% | 85.7% |
| 5o99A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 33.0 | 3.89e-01 | 87.6% | 95.0% |
| 2a0aA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 43.0 | 3.85e-01 | 94.4% | 100.0% |
| 1q7hA01 | 3.10.450.120 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 | 0.52 | 28.0 | 3.21e-01 | 84.3% | 70.8% |
| 3eb8B01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.51 | 27.0 | 3.16e-01 | 76.4% | 73.8% |
| 1g29102 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 24.0 | 3.09e-01 | 78.7% | 82.2% |
| 6hgcA01 | 3.40.532.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase | 0.50 | 43.0 | 3.49e-01 | 100.0% | 89.0% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3707024 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.77 | 72.0 | 5.23e-01 | 100.0% | 40.6% |
| 4025316 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.75 | 70.0 | 5.23e-01 | 100.0% | 43.9% |
| 4029401 | 219.1.1.14 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin | 0.63 | 47.0 | 3.72e-01 | 100.0% | 38.4% |
| 3603020 | 2.14.1.1 ↗ | beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC | 0.63 | 30.0 | 3.68e-01 | 76.4% | 70.9% |
| 3989333 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.61 | 31.0 | 3.65e-01 | 79.8% | 70.0% |
| 3360341 | 219.1.1.14 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin | 0.60 | 43.0 | 3.28e-01 | 100.0% | 32.7% |
| 4231842 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.59 | 42.0 | 4.38e-01 | 94.4% | 82.5% |
| 4473126 | 4.6.1.6 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM | 0.59 | 38.0 | 4.35e-01 | 96.6% | 90.8% |
| 3179593 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.58 | 46.0 | 4.19e-01 | 92.1% | 63.3% |
| 3995797 | 220.1.1.160 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD | 0.57 | 35.0 | 4.02e-01 | 87.6% | 84.6% |
| 3896701 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.55 | 37.0 | 3.72e-01 | 92.1% | 68.9% |
| 4607576 | 4.1.1.370 ↗ | beta barrels › SH3 › SH3 › SH3 › PF28261 | 0.55 | 37.0 | 4.17e-01 | 85.4% | 90.0% |
| 3904253 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.55 | 37.0 | 4.27e-01 | 93.3% | 96.9% |
| 3622643 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.54 | 42.0 | 4.30e-01 | 100.0% | 88.2% |
| 165220 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.54 | 37.0 | 4.02e-01 | 92.1% | 86.3% |
| 3930197 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 34.0 | 3.35e-01 | 94.4% | 58.0% |
| 826 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.52 | 43.0 | 3.85e-01 | 94.4% | 100.0% |
| 4962895 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 32.0 | 3.78e-01 | 76.4% | 100.0% |
| 4887360 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.51 | 25.0 | 2.91e-01 | 75.3% | 65.0% |
| 3397702 | 3914.1.1.1 ↗ | alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin | 0.51 | 45.0 | 2.76e-01 | 100.0% | 65.7% |
D2
medium
residues 90-183
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4mndA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.57 | 40.0 | 3.22e-01 | 73.4% | 81.7% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.57 | 37.0 | 3.94e-01 | 97.9% | 78.5% |