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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00310
Bact-VirSR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00310
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-155
Domain cluster:
rep: ALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00093__D20-135
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2l8yA00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.62 | 42.0 | 4.47e-01 | 100.0% | 80.0% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1916704 | 872.12.1.1 ↗ | a+b two layers › Dodecin subunit-like › Francisella virulence factor › Francisella virulence factor › PF30739 | 0.63 | 41.0 | 4.38e-01 | 100.0% | 75.2% |
| 3588078 | 872.3.1.0 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like | 0.60 | 41.0 | 4.61e-01 | 100.0% | 95.6% |
| 3612888 | 304.31.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase | 0.58 | 35.0 | 3.53e-01 | 88.4% | 58.3% |
| 3981520 | 872.3.1.4 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › DUF4156 | 0.56 | 40.0 | 4.45e-01 | 100.0% | 95.7% |
| 3973696 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 37.0 | 3.70e-01 | 82.6% | 65.6% |
| 3184391 | 304.126.1.1 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.55 | 35.0 | 3.70e-01 | 97.5% | 70.0% |
| 3719736 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.54 | 33.0 | 2.60e-01 | 96.7% | 27.4% |
| 3448933 | 304.20.1.1 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP_RNA-bind | 0.51 | 31.0 | 3.16e-01 | 88.4% | 59.2% |
| 3729608 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.51 | 34.0 | 3.41e-01 | 100.0% | 64.8% |