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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00318
Bact-VirSR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00318
Identity
- Kingdom:
- phage
Quality
82.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-78
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mhyG02 | 1.20.1280.30 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 | 0.73 | 50.0 | 5.19e-01 | 70.5% | 87.7% |
| 3nb2A02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.69 | 60.0 | 4.86e-01 | 100.0% | 65.8% |
| 3vkgB03 | 1.20.58.1120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 | 0.68 | 55.0 | 4.38e-01 | 87.2% | 63.5% |
| 1dk5A04 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.68 | 48.0 | 5.03e-01 | 74.4% | 97.1% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.68 | 47.0 | 4.33e-01 | 74.4% | 72.6% |
| 3onqA01 | 1.20.5.5100 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.67 | 37.0 | 4.69e-01 | 73.1% | 100.0% |
| 3r2cA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.65 | 46.0 | 3.78e-01 | 73.1% | 89.9% |
| 2ilrA00 | 1.25.40.480 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.65 | 58.0 | 4.06e-01 | 100.0% | 42.6% |
| 4dlqA02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.65 | 56.0 | 5.28e-01 | 98.7% | 100.0% |
| 6u3wB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.64 | 55.0 | 3.74e-01 | 100.0% | 26.1% |
| 2xevB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.64 | 52.0 | 4.60e-01 | 97.4% | 59.7% |
| 4rg6A03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.62 | 50.0 | 4.23e-01 | 100.0% | 51.9% |
| 1zk8B02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.62 | 47.0 | 3.97e-01 | 82.1% | 65.2% |
| 3qkyA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.61 | 53.0 | 3.76e-01 | 100.0% | 35.1% |
| 4ui9Y03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.61 | 48.0 | 4.80e-01 | 100.0% | 87.5% |
| 1tzvA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.60 | 46.0 | 3.86e-01 | 84.6% | 97.2% |
| 3u4tB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 47.0 | 3.38e-01 | 96.2% | 27.2% |
| 7tj4A01 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 52.0 | 4.55e-01 | 100.0% | 81.7% |
| 3vprA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 45.0 | 3.73e-01 | 82.1% | 62.8% |
| 8ex5A01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.59 | 42.0 | 3.21e-01 | 74.4% | 69.1% |
| 3ma5A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.59 | 49.0 | 4.75e-01 | 100.0% | 84.4% |
| 1k8kG00 | 1.25.40.190 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Actin-related protein 2/3 complex subunit 5 | 0.58 | 50.0 | 4.20e-01 | 98.7% | 77.7% |
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.57 | 48.0 | 3.61e-01 | 100.0% | 47.6% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 40.0 | 3.32e-01 | 73.1% | 58.2% |
| 4g1tA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 48.0 | 4.14e-01 | 93.6% | 65.0% |
| 2ig3A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 41.0 | 3.47e-01 | 100.0% | 46.5% |
| 3ubcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 39.0 | 3.37e-01 | 75.6% | 63.4% |
| 1bdp002 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.53 | 35.0 | 3.19e-01 | 91.0% | 48.6% |
| 3lynB00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.52 | 35.0 | 3.09e-01 | 71.8% | 90.3% |
| 1cqxA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 40.0 | 3.29e-01 | 84.6% | 85.3% |
| 2cwyA00 | 1.10.3450.10 | Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like | 0.51 | 41.0 | 3.93e-01 | 100.0% | 76.3% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3524429 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.76 | 53.0 | 4.89e-01 | 73.1% | 91.0% |
| 3895658 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.74 | 52.0 | 4.62e-01 | 73.1% | 93.6% |
| 3827580 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.74 | 56.0 | 4.88e-01 | 82.1% | 57.5% |
| 3577620 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.73 | 52.0 | 4.57e-01 | 74.4% | 87.0% |
| 3714315 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.72 | 50.0 | 4.52e-01 | 71.8% | 82.9% |
| 4650332 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.72 | 61.0 | 5.04e-01 | 100.0% | 52.9% |
| 3228159 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.71 | 49.0 | 3.97e-01 | 71.8% | 66.7% |
| 3630705 | 109.4.1.628 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS | 0.71 | 62.0 | 3.94e-01 | 100.0% | 24.8% |
| 3500958 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.70 | 54.0 | 4.58e-01 | 83.3% | 90.8% |
| 3899959 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.68 | 48.0 | 4.37e-01 | 74.4% | 96.2% |
| 3899960 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.67 | 48.0 | 4.46e-01 | 75.6% | 90.0% |
| 3784892 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 58.0 | 4.81e-01 | 100.0% | 58.6% |
| 3818654 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 55.0 | 5.26e-01 | 100.0% | 77.9% |
| 4020519 | 633.15.1.0 ↗ | alpha bundles › Bromodomain-like › alpha-ketoacid dehydrogenase kinase-N › alpha-ketoacid dehydrogenase kinase-N | 0.66 | 45.0 | 3.56e-01 | 70.5% | 94.4% |
| 5025672 | 109.4.1.186 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANAPC3 | 0.66 | 54.0 | 4.37e-01 | 100.0% | 45.8% |
| 3647515 | 109.4.1.1606 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30484 | 0.66 | 52.0 | 4.75e-01 | 100.0% | 63.6% |
| 3640333 | 109.4.1.628 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS | 0.65 | 57.0 | 3.37e-01 | 100.0% | 18.5% |
| 3174125 | 109.4.1.22 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N | 0.65 | 56.0 | 3.83e-01 | 100.0% | 26.1% |
| 5012377 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.65 | 55.0 | 3.74e-01 | 100.0% | 25.2% |
| 3895625 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.64 | 53.0 | 4.47e-01 | 89.7% | 83.8% |
| 4969693 | 4266.2.1.2 ↗ | alpha bundles › Hyaluronidase domain-like › TTHA0068-like › TTHA0068-like › Csm6_6H | 0.64 | 46.0 | 4.24e-01 | 76.9% | 61.9% |
| 3439727 | 109.7.1.23 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › PF30484 | 0.64 | 49.0 | 5.03e-01 | 96.2% | 89.3% |
| 3300571 | 109.4.1.1137 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT10_TPR | 0.63 | 47.0 | 4.24e-01 | 82.1% | 57.3% |
| 3227599 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 48.0 | 3.84e-01 | 100.0% | 40.0% |
| 3642502 | 109.4.1.1171 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm_PDR | 0.62 | 53.0 | 4.76e-01 | 96.2% | 70.9% |
| 3316901 | 109.4.1.1171 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm_PDR | 0.62 | 55.0 | 4.36e-01 | 100.0% | 53.1% |
| 3166845 | 109.4.1.5 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 | 0.61 | 52.0 | 3.87e-01 | 98.7% | 35.3% |
| 3448959 | 109.4.1.1171 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm_PDR | 0.61 | 52.0 | 4.29e-01 | 96.2% | 73.3% |
| 4374654 | 109.4.1.362 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1,TPR_8 | 0.61 | 53.0 | 4.33e-01 | 100.0% | 51.0% |
| 3736796 | 633.15.1.1 ↗ | alpha bundles › Bromodomain-like › alpha-ketoacid dehydrogenase kinase-N › alpha-ketoacid dehydrogenase kinase-N › BCDHK_Adom3 | 0.61 | 43.0 | 3.97e-01 | 75.6% | 89.5% |
| 3726193 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 51.0 | 3.99e-01 | 100.0% | 67.4% |
| 3319010 | 109.4.1.186 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANAPC3 | 0.60 | 47.0 | 3.99e-01 | 100.0% | 49.0% |
| 4012243 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 50.0 | 3.78e-01 | 97.4% | 87.5% |
| 5024551 | 4266.2.1.1 ↗ | alpha bundles › Hyaluronidase domain-like › TTHA0068-like › TTHA0068-like › DUF309 | 0.56 | 47.0 | 3.86e-01 | 97.4% | 79.1% |
| 3399981 | 109.4.1.1666 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_10 | 0.54 | 46.0 | 3.82e-01 | 100.0% | 70.7% |
| 4979205 | 613.1.1.0 ↗ | alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) | 0.52 | 40.0 | 3.13e-01 | 89.7% | 36.2% |
| 5045580 | 613.1.1.1 ↗ | alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c | 0.52 | 39.0 | 3.08e-01 | 89.7% | 36.6% |