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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00378
Bact-VirSR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00378
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-99
Domain cluster:
rep: MN988552.1__QIG76183.1__EVC24_162__00162__D4-119
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ng4A02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.62 | 46.0 | 4.08e-01 | 91.7% | 54.3% |
| 2qz8A02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.61 | 43.0 | 4.62e-01 | 89.6% | 87.7% |
| 2z30B00 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.58 | 36.0 | 4.09e-01 | 89.6% | 90.8% |
| 2cveA02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 38.0 | 4.36e-01 | 86.5% | 98.5% |
| 3nycA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.57 | 45.0 | 3.95e-01 | 93.8% | 55.3% |
| 2fpnA01 | 3.30.2030.10 | Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like | 0.56 | 46.0 | 4.09e-01 | 90.6% | 78.6% |
| 1va6B02 | 3.30.590.20 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › | 0.55 | 44.0 | 2.89e-01 | 86.5% | 51.2% |
| 4ctaA02 | 3.30.70.2860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 39.0 | 4.24e-01 | 87.5% | 94.7% |
| 6k2eA01 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 34.0 | 3.87e-01 | 87.5% | 89.7% |
| 1bccB02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 42.0 | 3.47e-01 | 92.7% | 84.9% |
| 2f1fA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.51 | 37.0 | 4.03e-01 | 89.6% | 96.2% |
| 2ftrA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 42.0 | 4.13e-01 | 93.8% | 95.1% |
| 1ygyA04 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.50 | 37.0 | 3.99e-01 | 91.7% | 98.7% |
| 4ncbA01 | 3.30.530.60 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.50 | 38.0 | 3.37e-01 | 82.3% | 74.7% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6702 | 244.1.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO | 0.61 | 46.0 | 4.77e-01 | 91.7% | 86.4% |
| 3684388 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.61 | 40.0 | 4.49e-01 | 91.7% | 91.4% |
| 4948075 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.61 | 43.0 | 4.67e-01 | 91.7% | 94.7% |
| 4960508 | 244.1.1.14 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › FAD-depend_C | 0.59 | 49.0 | 3.85e-01 | 91.7% | 85.2% |
| 3672544 | 2003.1.2.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO | 0.58 | 51.0 | 3.50e-01 | 100.0% | 92.3% |
| 4972094 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.58 | 41.0 | 4.33e-01 | 91.7% | 84.7% |
| 3386827 | 304.8.1.3 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NapD | 0.57 | 40.0 | 4.07e-01 | 90.6% | 73.7% |
| 3503168 | 11.1.5.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub | 0.57 | 33.0 | 3.37e-01 | 88.5% | 56.8% |
| 4968352 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.56 | 31.0 | 3.25e-01 | 92.7% | 57.6% |
| 1811230 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.56 | 47.0 | 4.14e-01 | 93.8% | 92.3% |
| 3291483 | 304.121.1.0 ↗ | a+b two layers › Alpha-beta plaits › SP0830-like › SP0830-like | 0.55 | 39.0 | 4.10e-01 | 92.7% | 84.7% |
| 4062805 | 304.5.1.5 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › HisG_C | 0.55 | 38.0 | 4.24e-01 | 91.7% | 94.6% |
| 3258106 | 304.33.1.0 ↗ | a+b two layers › Alpha-beta plaits › CheY-binding domain of CheA › CheY-binding domain of CheA | 0.54 | 40.0 | 4.35e-01 | 92.7% | 100.0% |
| 3915495 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.54 | 37.0 | 4.19e-01 | 89.6% | 97.1% |
| 5082755 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.54 | 40.0 | 4.10e-01 | 89.6% | 83.3% |
| 4939259 | 304.5.1.5 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › HisG_C | 0.54 | 37.0 | 3.88e-01 | 91.7% | 80.0% |
| 1154911 | 321.1.1.8 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Glu_cys_ligase | 0.54 | 42.0 | 2.83e-01 | 86.5% | 43.4% |
| 4475558 | 304.5.1.5 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › HisG_C | 0.53 | 37.0 | 4.12e-01 | 90.6% | 94.6% |
| 3304434 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.52 | 35.0 | 3.82e-01 | 92.7% | 92.9% |
| 166656 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.52 | 41.0 | 4.20e-01 | 92.7% | 91.1% |
| 4107133 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.52 | 36.0 | 3.97e-01 | 91.7% | 93.3% |
| 3196755 | 868.1.1.2 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA_triPase | 0.52 | 40.0 | 2.87e-01 | 85.4% | 88.4% |
| 4965145 | 244.1.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO | 0.51 | 43.0 | 4.29e-01 | 96.9% | 91.0% |
| 3335769 | 11.1.5.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub | 0.51 | 36.0 | 3.50e-01 | 90.6% | 66.7% |
| 3321291 | 11.1.1.1052 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28974 | 0.51 | 39.0 | 3.52e-01 | 89.6% | 60.8% |
| 3852395 | 11.1.1.297 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_2 | 0.50 | 39.0 | 3.39e-01 | 90.6% | 54.0% |