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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00406

Bact-Vir

SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00406

Identity

Kingdom:
phage

Quality

90.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-84
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 59.0 6.31e-01 75.6% 97.2%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 54.0 6.35e-01 81.7% 100.0%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.78 59.0 5.44e-01 80.5% 68.3%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 54.0 6.18e-01 73.2% 96.8%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 55.0 5.84e-01 75.6% 93.1%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 50.0 5.58e-01 75.6% 87.5%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 58.0 5.97e-01 84.1% 90.9%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 50.0 5.09e-01 78.0% 72.5%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.71 53.0 4.46e-01 78.0% 97.7%
2ky9A01 2.30.30.1130 Mainly Beta › Roll › SH3 type barrels. › 0.71 49.0 5.39e-01 72.0% 94.0%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 50.0 5.16e-01 74.4% 85.5%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 54.0 5.46e-01 81.7% 86.4%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 60.0 5.08e-01 98.8% 59.4%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.66 47.0 5.12e-01 75.6% 97.0%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 53.0 4.14e-01 87.8% 52.0%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 46.0 2.89e-01 75.6% 17.1%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 5.07e-01 90.2% 96.4%
2i9yA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 44.0 3.55e-01 73.2% 79.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 4.49e-01 74.4% 87.0%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 48.0 4.35e-01 85.4% 69.3%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 49.0 4.16e-01 85.4% 60.6%
2xnjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 44.0 4.03e-01 74.4% 75.0%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 46.0 4.02e-01 81.7% 58.7%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 43.0 4.13e-01 74.4% 72.9%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 47.0 3.54e-01 85.4% 43.4%
1dleB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 46.0 3.87e-01 85.4% 81.0%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 45.0 3.41e-01 84.1% 43.8%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 43.0 4.01e-01 81.7% 100.0%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.57 41.0 3.29e-01 78.0% 45.9%
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 45.0 4.09e-01 87.8% 74.3%
2ok5A02 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 47.0 3.52e-01 93.9% 88.1%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 42.0 3.58e-01 81.7% 68.8%
2oviA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.54 40.0 3.40e-01 84.1% 62.0%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 37.0 3.41e-01 70.7% 84.3%
5exvC00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.54 40.0 3.35e-01 84.1% 60.6%
4l3rA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.53 37.0 3.14e-01 72.0% 93.7%
1tw0A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 42.0 3.46e-01 87.8% 85.4%
5e4bA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 38.0 3.08e-01 81.7% 76.1%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 37.0 2.85e-01 79.3% 100.0%
ECOD (92)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3866038 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.83 56.0 5.58e-01 78.0% 67.1%
3199259 4.1.1.286 beta barrels › SH3 › SH3 › SH3 › DUF7072 0.82 61.0 6.84e-01 87.8% 98.5%
3936885 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 60.0 6.69e-01 78.0% 100.0%
3579591 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.81 53.0 6.39e-01 70.7% 100.0%
3625263 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 60.0 5.56e-01 78.0% 76.0%
3617355 4.1.1.348 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor, SMN_YG-box 0.79 54.0 5.14e-01 75.6% 61.1%
4105328 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.79 53.0 5.96e-01 72.0% 87.7%
3997949 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 56.0 5.41e-01 79.3% 66.7%
3768346 4.1.1.226 beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor 0.79 57.0 5.97e-01 75.6% 85.3%
3492016 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.79 62.0 6.00e-01 93.9% 75.6%
3317030 4.1.1.366 beta barrels › SH3 › SH3 › SH3 › PF26738 0.78 55.0 6.39e-01 74.4% 100.0%
3504417 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.78 54.0 5.20e-01 78.0% 64.4%
3525406 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.78 54.0 4.85e-01 78.0% 53.6%
3672445 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 57.0 4.59e-01 78.0% 42.8%
3901117 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.78 56.0 4.23e-01 85.4% 33.9%
3405627 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 53.0 5.03e-01 75.6% 61.1%
3627842 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 53.0 5.15e-01 78.0% 64.4%
3910433 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 58.0 6.46e-01 79.3% 100.0%
4420173 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.77 55.0 5.78e-01 82.9% 81.3%
3840677 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 56.0 5.20e-01 80.5% 62.0%
3781440 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.77 56.0 5.71e-01 75.6% 92.5%
3665882 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.77 59.0 4.90e-01 80.5% 98.5%
3753231 4.1.1.226 beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor 0.77 56.0 5.67e-01 75.6% 85.0%
3407821 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 55.0 5.46e-01 82.9% 71.8%
3876680 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.76 56.0 5.24e-01 76.8% 65.0%
3839929 3174.2.1.1 beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.76 52.0 5.86e-01 74.4% 92.1%
3393347 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 52.0 5.05e-01 78.0% 64.4%
3195050 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 55.0 5.24e-01 78.0% 65.3%
3551576 4.1.1.226 beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor 0.76 57.0 5.94e-01 78.0% 86.7%
3970890 3174.2.1.1 beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.75 51.0 5.83e-01 73.2% 95.0%
3414912 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 54.0 4.91e-01 81.7% 58.1%
3576940 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 67.0 4.85e-01 98.8% 41.8%
3257607 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 52.0 5.46e-01 72.0% 94.7%
3673944 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.75 59.0 4.79e-01 84.1% 96.6%
3575865 4.1.1.169 beta barrels › SH3 › SH3 › SH3 › DUF4819 0.74 60.0 6.47e-01 85.4% 100.0%
3999725 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 52.0 5.15e-01 74.4% 69.4%
3190835 4.1.1.286 beta barrels › SH3 › SH3 › SH3 › DUF7072 0.74 58.0 5.74e-01 89.0% 78.8%
3388070 3174.2.1.1 beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.74 49.0 5.65e-01 70.7% 93.3%
3437523 4.1.1.303 beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.74 52.0 5.61e-01 73.2% 88.6%
4524466 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 53.0 5.77e-01 82.9% 88.6%
4936914 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.73 51.0 4.69e-01 72.0% 62.9%
3609629 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 55.0 5.20e-01 87.8% 67.4%
3246086 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 55.0 5.19e-01 78.0% 67.4%
4145391 3174.2.1.1 beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.73 49.0 5.60e-01 73.2% 95.0%
3275615 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.73 56.0 4.83e-01 82.9% 99.2%
4238582 3174.2.1.1 beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.73 48.0 5.50e-01 70.7% 93.3%
4015427 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 58.0 4.17e-01 87.8% 32.1%
3880508 4.1.1.129 beta barrels › SH3 › SH3 › SH3 › Tudor_5 0.73 52.0 4.95e-01 74.4% 66.3%
3780847 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.72 57.0 4.58e-01 87.8% 45.3%
5006274 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.72 50.0 4.18e-01 72.0% 42.9%
4602539 3174.2.1.1 beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.72 49.0 5.47e-01 72.0% 92.1%
3408330 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 54.0 5.03e-01 79.3% 68.0%
3319789 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.71 58.0 5.75e-01 86.6% 100.0%
3575959 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 56.0 5.00e-01 82.9% 64.5%
3656401 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 55.0 5.75e-01 85.4% 89.3%
3712782 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 54.0 5.49e-01 80.5% 88.7%
3712451 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 56.0 4.89e-01 85.4% 64.0%
3627869 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.71 57.0 4.55e-01 85.4% 71.6%
3263467 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 49.0 5.04e-01 73.2% 85.0%
3519122 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 54.0 5.25e-01 82.9% 83.3%
4168737 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 48.0 5.08e-01 72.0% 90.5%
3416068 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.69 57.0 4.56e-01 87.8% 61.9%
3714156 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 57.0 5.65e-01 89.0% 95.3%
3226827 4.1.1.133 beta barrels › SH3 › SH3 › SH3 › SMN_YG-box 0.69 53.0 4.87e-01 80.5% 65.7%
147797 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.69 49.0 5.39e-01 74.4% 92.6%
3473205 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 56.0 4.39e-01 85.4% 51.2%
3290160 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.68 54.0 5.48e-01 84.1% 91.3%
3597690 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 51.0 5.49e-01 85.4% 92.9%
3706223 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 53.0 4.89e-01 82.9% 69.5%
3790897 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 52.0 4.90e-01 81.7% 73.0%
4122525 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 47.0 4.88e-01 72.0% 84.0%
3280641 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 51.0 4.76e-01 79.3% 72.0%
4031510 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 51.0 4.95e-01 80.5% 78.9%
3702177 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 50.0 4.73e-01 80.5% 94.0%
3942912 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.66 47.0 4.71e-01 74.4% 81.2%
4209798 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.66 49.0 4.90e-01 79.3% 92.9%
3289944 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.66 47.0 4.55e-01 74.4% 74.4%
3259547 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 57.0 5.16e-01 98.8% 78.3%
5033892 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 45.0 4.83e-01 74.4% 96.9%
4136160 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 56.0 5.21e-01 95.1% 97.0%
3281271 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.64 47.0 4.56e-01 78.0% 78.9%
4034320 4.1.1.398 beta barrels › SH3 › SH3 › SH3 › YolD 0.63 46.0 4.92e-01 75.6% 97.1%
3632407 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 49.0 4.40e-01 84.1% 93.2%
3286662 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 47.0 4.42e-01 79.3% 69.0%
4071824 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.63 44.0 4.61e-01 74.4% 89.3%
4141828 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 45.0 4.68e-01 78.0% 91.9%
4118552 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 42.0 4.43e-01 75.6% 86.7%
3283097 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.59 48.0 4.44e-01 91.5% 74.5%
5016546 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 39.0 4.06e-01 79.3% 96.0%
3509752 219.1.1.50 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH_1 0.53 42.0 2.85e-01 89.0% 54.4%
3967527 4216.1.1.1 a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.53 41.0 3.36e-01 87.8% 61.5%
5009577 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.52 40.0 3.51e-01 82.9% 69.6%