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SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00425
Bact-VirSR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00425
Identity
- Kingdom:
- phage
Quality
79.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-51
Domain cluster:
representative
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4321934 | 101.1.2.311 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA12 | 0.75 | 64.0 | 4.54e-01 | 98.0% | 33.8% |
| 3967283 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.65 | 49.0 | 4.01e-01 | 80.4% | 45.3% |
D2
medium
residues 53-64_143-205
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.66 | 36.0 | 4.25e-01 | 76.0% | 81.2% |
| 5cyxA02 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.61 | 46.0 | 3.99e-01 | 81.3% | 65.3% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 36.0 | 3.81e-01 | 97.3% | 68.1% |
| 4ak2A02 | 2.60.40.2730 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 47.0 | 3.67e-01 | 93.3% | 76.9% |
| 3ff2A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 41.0 | 3.48e-01 | 97.3% | 48.7% |
| 1atrA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 34.0 | 3.29e-01 | 100.0% | 51.7% |
| 1m1sA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 39.0 | 3.50e-01 | 76.0% | 71.6% |
| 2vqeE01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 41.0 | 4.41e-01 | 98.7% | 92.2% |
| 1a21A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 41.0 | 3.77e-01 | 82.7% | 73.5% |
| 4nohA02 | 2.40.40.60 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.54 | 37.0 | 3.41e-01 | 72.0% | 91.7% |
| 5erdA03 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.54 | 40.0 | 3.59e-01 | 81.3% | 68.2% |
| 1hcyA03 | 2.60.40.1520 | Mainly Beta › Sandwich › Immunoglobulin-like › Hemocyanin, C-terminal domain | 0.53 | 39.0 | 2.94e-01 | 80.0% | 74.6% |
| 2wyoD02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.53 | 41.0 | 3.54e-01 | 86.7% | 71.0% |
| 2xzmE01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 40.0 | 3.43e-01 | 100.0% | 52.6% |
| 6t8iA01 | 2.60.40.1740 | Mainly Beta › Sandwich › Immunoglobulin-like › hypothetical protein (bacova_03559) | 0.52 | 40.0 | 3.32e-01 | 86.7% | 69.0% |
| 2q0zX03 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.50 | 38.0 | 3.34e-01 | 81.3% | 57.4% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3476522 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.61 | 47.0 | 4.01e-01 | 81.3% | 65.8% |
| 3486307 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.61 | 51.0 | 3.33e-01 | 92.0% | 32.4% |
| 3471067 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.60 | 50.0 | 3.32e-01 | 92.0% | 32.4% |
| 3992949 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.60 | 45.0 | 3.81e-01 | 81.3% | 56.9% |
| 3799348 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 45.0 | 3.76e-01 | 80.0% | 72.8% |
| 4942471 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 43.0 | 3.81e-01 | 81.3% | 66.1% |
| 3285425 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 44.0 | 3.46e-01 | 82.7% | 73.8% |
| 3354564 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 43.0 | 4.71e-01 | 94.7% | 98.3% |
| 4633555 | 11.1.1.150 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Velvet | 0.56 | 48.0 | 3.61e-01 | 96.0% | 63.7% |
| 3628019 | 11.1.1.13 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Motile_Sperm | 0.56 | 40.0 | 3.57e-01 | 76.0% | 72.2% |
| 3510348 | 922.1.1.0 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat | 0.54 | 35.0 | 4.04e-01 | 76.0% | 98.0% |
| 3854225 | 11.1.1.830 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_CFAP65_8th | 0.53 | 38.0 | 3.35e-01 | 77.3% | 70.0% |
| 3522999 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.53 | 40.0 | 3.54e-01 | 85.3% | 64.2% |
| 3508254 | 11.1.1.620 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TMEM132_6th | 0.53 | 39.0 | 3.69e-01 | 81.3% | 74.7% |
| 3894338 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.53 | 39.0 | 3.42e-01 | 81.3% | 78.2% |
| 3395371 | 11.1.1.55 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mo-co_dimer | 0.52 | 37.0 | 3.16e-01 | 76.0% | 99.2% |
| 4012674 | 3156.1.1.0 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related | 0.52 | 37.0 | 2.98e-01 | 76.0% | 54.2% |
| 3623451 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 38.0 | 3.19e-01 | 80.0% | 65.9% |
D3
medium
residues 65-142
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k2tA01 | 3.30.505.50 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain | 0.67 | 39.0 | 4.87e-01 | 83.3% | 100.0% |
| 4tyzA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 31.0 | 2.80e-01 | 100.0% | 31.2% |
| 1e0bA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 30.0 | 3.32e-01 | 100.0% | 54.1% |
| 2xp1A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.61 | 46.0 | 4.33e-01 | 85.9% | 65.3% |
| 2jhnA01 | 3.30.310.20 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain | 0.60 | 40.0 | 3.60e-01 | 97.4% | 47.8% |
| 3mazA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.59 | 47.0 | 4.33e-01 | 84.6% | 66.7% |
| 3vcxA02 | 3.30.720.110 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.58 | 28.0 | 3.23e-01 | 98.7% | 58.5% |
| 2eyqA05 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.56 | 33.0 | 3.77e-01 | 97.4% | 78.0% |
| 3ednA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.55 | 44.0 | 3.75e-01 | 88.5% | 73.1% |
| 2i51B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 42.0 | 3.30e-01 | 88.5% | 78.0% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.54 | 29.0 | 3.06e-01 | 96.2% | 56.5% |
| 1eigA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 35.0 | 3.67e-01 | 94.9% | 72.6% |
| 1clwA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.53 | 43.0 | 2.61e-01 | 92.3% | 13.1% |
| 2czoA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.50 | 27.0 | 2.38e-01 | 100.0% | 28.5% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3529132 | 12.1.1.89 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GMNC_C | 0.66 | 29.0 | 4.10e-01 | 97.4% | 88.2% |
| 4588602 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.63 | 40.0 | 4.72e-01 | 74.4% | 98.0% |
| 3961965 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.62 | 41.0 | 4.41e-01 | 79.5% | 80.0% |
| 5718 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.62 | 32.0 | 3.55e-01 | 98.7% | 61.3% |
| 3228053 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.62 | 42.0 | 4.78e-01 | 80.8% | 98.2% |
| 3991073 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.62 | 30.0 | 3.43e-01 | 100.0% | 61.8% |
| 3958768 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 33.0 | 3.34e-01 | 100.0% | 51.2% |
| 4554426 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.61 | 41.0 | 4.69e-01 | 79.5% | 98.1% |
| 1384885 | 214.1.1.6 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2_2 | 0.61 | 46.0 | 4.46e-01 | 85.9% | 70.5% |
| 3934183 | 214.1.1.9 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7063 | 0.60 | 46.0 | 4.15e-01 | 85.9% | 61.0% |
| 3954395 | 3097.1.1.0 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y | 0.59 | 39.0 | 4.42e-01 | 79.5% | 96.4% |
| 3206625 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.58 | 31.0 | 3.79e-01 | 84.6% | 86.7% |
| 3930641 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.58 | 45.0 | 4.08e-01 | 85.9% | 61.9% |
| 3255259 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.58 | 44.0 | 3.89e-01 | 85.9% | 55.7% |
| 3384812 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 47.0 | 3.28e-01 | 88.5% | 29.8% |
| 3928322 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.57 | 45.0 | 4.04e-01 | 85.9% | 61.9% |
| 3996228 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.57 | 45.0 | 3.68e-01 | 85.9% | 48.3% |
| 3274180 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.56 | 43.0 | 3.89e-01 | 85.9% | 59.1% |
| 3928377 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.56 | 45.0 | 3.46e-01 | 89.7% | 65.1% |
| 4116186 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.56 | 46.0 | 3.44e-01 | 89.7% | 57.9% |
| 169137 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.55 | 44.0 | 3.77e-01 | 88.5% | 74.8% |
| None | — | 0.55 | 46.0 | 3.34e-01 | 93.6% | 57.0% | |
| 4646311 | 2003.1.5.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT | 0.55 | 46.0 | 3.42e-01 | 96.2% | 56.8% |
| 5038962 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 31.0 | 3.84e-01 | 88.5% | 100.0% |
| 1487323 | 79.1.1.4 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › PhageP22-tail | 0.53 | 43.0 | 3.80e-01 | 91.0% | 59.2% |
| 4025829 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 31.0 | 3.67e-01 | 75.6% | 85.5% |
| 4964070 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.52 | 45.0 | 3.22e-01 | 98.7% | 48.8% |
| 3695189 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.52 | 41.0 | 2.94e-01 | 88.5% | 37.3% |
| 4034031 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.52 | 36.0 | 3.97e-01 | 79.5% | 86.2% |
| 4650778 | 2008.1.1.20 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 | 0.52 | 43.0 | 3.33e-01 | 92.3% | 52.2% |
| 4395723 | 2003.1.5.153 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT, Methyltransf_25 | 0.52 | 45.0 | 3.33e-01 | 98.7% | 57.2% |
| 3837815 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.51 | 43.0 | 2.61e-01 | 97.4% | 15.0% |
| 3721277 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.51 | 39.0 | 2.66e-01 | 83.3% | 53.9% |
| 4160115 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.51 | 40.0 | 3.42e-01 | 84.6% | 70.4% |
| 4027162 | 5.1.11.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed | 0.50 | 42.0 | 2.72e-01 | 96.2% | 96.1% |
| 682 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.50 | 40.0 | 3.83e-01 | 89.7% | 76.8% |