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SR-VP_4-6_scaffold_141_4176636_prodigal-single.1__X__X__00105
Bact-VirSR-VP_4-6_scaffold_141_4176636_prodigal-single.1__X__X__00105
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-118_251-289
Domain cluster:
rep: MW584195.1__QSM04178.1__PROPHIGD51-2_40__00040__D376-428_443-519_647-661
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21722.5 best | Gly_rich_2 | 47.3 | 3.90e-12 | 94.3% | 59.4% |
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zx5A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.71 | 27.0 | 3.65e-01 | 98.1% | 63.9% |
| 3ibmB00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 25.0 | 2.67e-01 | 99.4% | 36.3% |
| 3cewA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 27.0 | 3.20e-01 | 99.4% | 55.5% |
| 2gu9A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 27.0 | 3.28e-01 | 98.7% | 60.2% |
| 2h6cA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 29.0 | 3.15e-01 | 98.1% | 51.2% |
| 2wfpA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 29.0 | 3.68e-01 | 98.7% | 74.5% |
| 3i7dA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 27.0 | 2.73e-01 | 99.4% | 40.1% |
| 4rd7A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 30.0 | 3.48e-01 | 100.0% | 63.9% |
| 1ne6A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 26.0 | 2.98e-01 | 98.1% | 50.8% |
| 4oi4C01 | 2.60.120.1030 | Mainly Beta › Sandwich › Jelly Rolls › Clp1, DNA binding domain | 0.60 | 28.0 | 3.77e-01 | 99.4% | 83.3% |
| 2gauA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 26.0 | 2.81e-01 | 98.1% | 45.3% |
| 3rnsA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 30.0 | 3.57e-01 | 99.4% | 70.4% |
| 3e97A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 27.0 | 2.81e-01 | 98.1% | 45.1% |
| 1yllC02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 31.0 | 3.73e-01 | 100.0% | 77.1% |
| 3rnsA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 29.0 | 3.61e-01 | 98.7% | 77.0% |
| 3h8uA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 30.0 | 3.41e-01 | 98.7% | 65.6% |
| 3ocpB00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 25.0 | 2.81e-01 | 98.1% | 48.4% |
| 5by5A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 30.0 | 3.44e-01 | 100.0% | 68.7% |
| 2vveA01 | 2.60.120.770 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 26.0 | 3.32e-01 | 98.1% | 73.1% |
| 3iwzA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 26.0 | 2.87e-01 | 98.1% | 50.7% |
| 7pzaA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 26.0 | 2.94e-01 | 98.1% | 54.9% |
| 3cjxA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 30.0 | 3.08e-01 | 100.0% | 53.3% |
| 2jx9A00 | 2.60.120.740 | Mainly Beta › Sandwich › Jelly Rolls › Rhamnose-binding lectin domain (RBL) | 0.55 | 34.0 | 4.12e-01 | 99.4% | 92.5% |
| 1o5lA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 26.0 | 2.89e-01 | 98.1% | 52.7% |
| 1tq5A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 30.0 | 3.51e-01 | 99.4% | 75.9% |
| 2qjvA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 31.0 | 3.55e-01 | 99.4% | 76.1% |
| 4ca9A00 | 2.60.120.340 | Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain | 0.54 | 32.0 | 3.97e-01 | 100.0% | 94.9% |
| 4mloA01 | 2.60.120.810 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 29.0 | 2.98e-01 | 99.4% | 51.6% |
| 1hw5A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 26.0 | 2.82e-01 | 98.1% | 52.7% |
| 7rh9A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 26.0 | 2.65e-01 | 98.1% | 44.2% |
| 6m9sD01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 27.0 | 3.25e-01 | 98.1% | 74.3% |
| 2pqqA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 25.0 | 2.66e-01 | 98.1% | 46.9% |
| 4yrdA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 30.0 | 3.39e-01 | 99.4% | 73.9% |
| 3ejkA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 31.0 | 3.11e-01 | 98.7% | 58.6% |
| 5lz6A00 | 2.60.120.680 | Mainly Beta › Sandwich › Jelly Rolls › GOLD domain | 0.51 | 32.0 | 3.58e-01 | 94.9% | 79.4% |
| 2mngA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 27.0 | 2.93e-01 | 98.7% | 61.1% |
| 3clpC00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 26.0 | 2.82e-01 | 98.7% | 57.9% |
| 1omiA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 26.0 | 3.02e-01 | 98.1% | 69.5% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2036597 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.70 | 27.0 | 3.16e-01 | 99.4% | 47.3% |
| 3215715 | 10.12.1.5 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C | 0.64 | 33.0 | 3.96e-01 | 99.4% | 72.7% |
| 4031118 | 10.12.1.100 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Polysacc_synt_C | 0.64 | 29.0 | 3.37e-01 | 98.7% | 57.1% |
| 4958880 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.62 | 27.0 | 3.42e-01 | 100.0% | 65.3% |
| 5045474 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.62 | 26.0 | 3.01e-01 | 99.4% | 50.4% |
| 4028878 | 929.1.1.0 ↗ | beta duplicates or obligate multimers › Resistin › Resistin › Resistin | 0.62 | 31.0 | 4.18e-01 | 98.1% | 96.0% |
| 2512620 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.61 | 26.0 | 3.18e-01 | 99.4% | 58.3% |
| 4990612 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.59 | 31.0 | 3.66e-01 | 99.4% | 71.8% |
| 180914 | 10.12.1.59 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin_C_2 | 0.59 | 30.0 | 3.58e-01 | 99.4% | 71.0% |
| 3943625 | 10.12.1.8 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding | 0.58 | 29.0 | 3.15e-01 | 100.0% | 54.8% |
| 4880218 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.58 | 26.0 | 3.04e-01 | 98.1% | 57.4% |
| 4052150 | 10.12.1.33 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ectoine_synth | 0.57 | 30.0 | 3.39e-01 | 99.4% | 64.0% |
| 5033980 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.56 | 26.0 | 3.09e-01 | 98.1% | 60.9% |
| 2670369 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.56 | 26.0 | 2.88e-01 | 98.1% | 51.2% |
| 3288347 | 10.12.1.85 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_6 | 0.56 | 29.0 | 2.83e-01 | 100.0% | 45.6% |
| 1290 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.55 | 27.0 | 2.83e-01 | 98.7% | 49.0% |
| 5030047 | 10.12.1.98 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MannoseP_isomer | 0.55 | 29.0 | 3.44e-01 | 98.7% | 74.3% |
| 3981437 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.55 | 30.0 | 3.02e-01 | 100.0% | 51.2% |
| 3933157 | 11.1.1.1085 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GBD_IRG7_N | 0.55 | 35.0 | 4.26e-01 | 98.1% | 99.0% |
| 5040182 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.55 | 37.0 | 4.41e-01 | 97.5% | 98.2% |
| 3560928 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.55 | 25.0 | 2.45e-01 | 98.1% | 37.6% |
| 5042218 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.54 | 33.0 | 4.07e-01 | 96.2% | 98.9% |
| 3618320 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 34.0 | 4.03e-01 | 97.5% | 93.5% |
| 3741925 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.53 | 26.0 | 2.68e-01 | 98.1% | 45.8% |
| 3519988 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 34.0 | 4.05e-01 | 98.1% | 93.6% |
| 315942 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.52 | 26.0 | 2.69e-01 | 97.5% | 49.3% |
| 164593 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.52 | 25.0 | 2.66e-01 | 98.1% | 46.9% |
| 2565054 | 10.12.1.65 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ToxT_N | 0.52 | 29.0 | 2.87e-01 | 99.4% | 50.9% |
| 2325643 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.52 | 25.0 | 2.76e-01 | 98.1% | 54.8% |
| 3411291 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 33.0 | 4.03e-01 | 98.1% | 100.0% |
| 5009955 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.50 | 33.0 | 3.89e-01 | 98.1% | 95.5% |