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SR-VP_4-6_scaffold_141_4176636_prodigal-single.1__X__X__00125
Bact-VirSR-VP_4-6_scaffold_141_4176636_prodigal-single.1__X__X__00125
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-85
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01541.31 best | GIY-YIG | 28.6 | 1.90e-06 | 97.6% | 82.0% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.80 | 72.0 | 7.00e-01 | 98.8% | 89.1% |
| 3klqA01 | 2.60.40.3050 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 38.0 | 3.41e-01 | 78.6% | 42.9% |
| 3b4vD01 | 3.90.290.10 | Alpha Beta › Alpha-Beta Complex › Extracellular Matrix Fibrillin › TGF-beta binding (TB) domain | 0.61 | 38.0 | 4.10e-01 | 100.0% | 75.7% |
| 3r5dA02 | 3.30.60.70 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Trimeric LpxA-like enzymes | 0.60 | 28.0 | 3.87e-01 | 88.1% | 87.8% |
| 3x17A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 37.0 | 3.51e-01 | 75.0% | 53.9% |
| 3h7lA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 38.0 | 3.65e-01 | 73.8% | 60.2% |
| 1tyjA00 | 2.60.40.680 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 37.0 | 2.99e-01 | 70.2% | 87.6% |
| 1t4aA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.55 | 38.0 | 3.97e-01 | 73.8% | 100.0% |
| 5eo9B01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 36.0 | 3.31e-01 | 75.0% | 55.5% |
| 3r5dA01 | 3.30.70.2010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 45.0 | 3.97e-01 | 100.0% | 90.7% |
| 3lrrA00 | 2.170.150.30 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › RIG-I-like receptor, C-terminal regulatory domain | 0.51 | 37.0 | 3.28e-01 | 75.0% | 80.2% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.51 | 40.0 | 4.06e-01 | 86.9% | 100.0% |
| 3afgA03 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 31.0 | 2.94e-01 | 76.2% | 50.0% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3404363 | 821.1.1.7 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG | 0.81 | 74.0 | 5.69e-01 | 100.0% | 77.7% |
| 3212287 | 821.1.1.7 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG | 0.80 | 73.0 | 5.98e-01 | 100.0% | 83.3% |
| 3963488 | 821.1.1.7 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG | 0.78 | 72.0 | 6.41e-01 | 100.0% | 74.8% |
| 5070409 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.78 | 59.0 | 5.86e-01 | 100.0% | 77.3% |
| 3505268 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.75 | 69.0 | 5.84e-01 | 100.0% | 94.8% |
| 4054044 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.74 | 65.0 | 6.15e-01 | 98.8% | 80.0% |
| 4344289 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.69 | 60.0 | 5.26e-01 | 100.0% | 64.6% |
| 3486309 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.66 | 34.0 | 3.20e-01 | 72.6% | 40.0% |
| 4929510 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 37.0 | 4.61e-01 | 70.2% | 100.0% |
| None | — | 0.60 | 38.0 | 3.99e-01 | 100.0% | 69.2% | |
| 3238728 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 37.0 | 3.49e-01 | 78.6% | 52.0% |
| 3404658 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 36.0 | 3.73e-01 | 76.2% | 66.3% |
| 3601329 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.56 | 33.0 | 3.24e-01 | 77.4% | 51.6% |
| 3597820 | 1.1.7.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 | 0.56 | 41.0 | 3.76e-01 | 79.8% | 69.6% |
| 4012606 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.52 | 34.0 | 3.09e-01 | 95.2% | 47.8% |
| 3171647 | 323.1.1.6 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf | 0.52 | 38.0 | 2.28e-01 | 77.4% | 86.4% |
| 4965849 | 3435.1.1.9 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › DUF4747 | 0.52 | 46.0 | 3.28e-01 | 100.0% | 97.3% |
| 3406339 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 36.0 | 3.04e-01 | 75.0% | 71.4% |