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SR-VP_4-6_scaffold_141_4176636_prodigal-single.1__X__X__00154
Bact-VirSR-VP_4-6_scaffold_141_4176636_prodigal-single.1__X__X__00154
Identity
- Kingdom:
- phage
Quality
82.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-66
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3drnB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.76 | 52.0 | 3.94e-01 | 71.9% | 84.0% |
| 1wp0A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.71 | 49.0 | 3.63e-01 | 71.9% | 90.0% |
| 2yztA00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.70 | 48.0 | 4.75e-01 | 70.3% | 68.2% |
| 4cy8A03 | 3.40.30.120 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.69 | 46.0 | 3.48e-01 | 70.3% | 58.9% |
| 2fy6A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.67 | 46.0 | 3.54e-01 | 71.9% | 85.3% |
| 3r4cA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.67 | 54.0 | 3.97e-01 | 89.1% | 45.5% |
| 4fo5A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.66 | 45.0 | 3.51e-01 | 70.3% | 83.8% |
| 3dueA00 | 3.40.1420.30 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › | 0.65 | 46.0 | 3.64e-01 | 73.4% | 94.5% |
| 2dkhA03 | 3.40.30.20 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Phenol hydroxylase, C-terminal dimerisation domain | 0.65 | 45.0 | 3.14e-01 | 73.4% | 68.1% |
| 8hmcA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.63 | 50.0 | 3.19e-01 | 85.9% | 73.4% |
| 1z5yE00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.63 | 44.0 | 3.56e-01 | 75.0% | 89.0% |
| 6brdA03 | 3.40.30.120 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.63 | 43.0 | 3.80e-01 | 70.3% | 68.4% |
| 4g56D00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.63 | 51.0 | 3.30e-01 | 89.1% | 64.7% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.63 | 48.0 | 4.02e-01 | 81.2% | 73.4% |
| 8f5pC01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 48.0 | 3.15e-01 | 84.4% | 71.7% |
| 2ju5A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.62 | 44.0 | 3.64e-01 | 76.6% | 94.4% |
| 2b30A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.62 | 52.0 | 3.81e-01 | 93.8% | 49.1% |
| 2m3xC02 | 2.40.10.360 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.62 | 43.0 | 4.20e-01 | 71.9% | 81.2% |
| 4fybA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.61 | 49.0 | 3.63e-01 | 85.9% | 79.5% |
| 5epfA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.61 | 50.0 | 3.80e-01 | 90.6% | 89.0% |
| 3jb9L00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 50.0 | 3.28e-01 | 92.2% | 63.1% |
| 4evxA00 | 1.10.1740.240 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.61 | 40.0 | 3.47e-01 | 82.8% | 44.3% |
| 2wm1A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.61 | 45.0 | 2.89e-01 | 81.2% | 20.5% |
| 4hwtA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.60 | 42.0 | 3.64e-01 | 76.6% | 92.7% |
| 1gp1A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 42.0 | 3.09e-01 | 73.4% | 89.1% |
| 2bmxB01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 51.0 | 3.75e-01 | 95.3% | 85.5% |
| 1emsA01 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.60 | 45.0 | 2.98e-01 | 81.2% | 42.8% |
| 3erwF00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 46.0 | 3.63e-01 | 82.8% | 93.1% |
| 1evlA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.59 | 41.0 | 3.56e-01 | 76.6% | 90.2% |
| 6az1g01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 47.0 | 3.06e-01 | 90.6% | 62.0% |
| 3wa5B00 | 2.60.120.1690 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 41.0 | 3.36e-01 | 79.7% | 51.6% |
| 2hjjA00 | 3.30.160.130 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains | 0.56 | 41.0 | 4.11e-01 | 79.7% | 81.8% |
| 5gu7C01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 43.0 | 3.54e-01 | 85.9% | 90.2% |
| 4ci8A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 47.0 | 3.06e-01 | 98.4% | 60.4% |
| 2pw4A00 | 1.10.3300.10 | Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain | 0.55 | 41.0 | 3.04e-01 | 81.2% | 29.5% |
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.55 | 39.0 | 3.46e-01 | 78.1% | 63.8% |
| 4hb9A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 44.0 | 2.71e-01 | 87.5% | 93.9% |
| 2f9sB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 44.0 | 3.53e-01 | 90.6% | 91.9% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 37.0 | 3.36e-01 | 75.0% | 83.5% |
| 4tkcA00 | 2.90.10.10 | Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain | 0.52 | 40.0 | 3.34e-01 | 85.9% | 96.6% |
| 1q67A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 34.0 | 2.76e-01 | 70.3% | 45.0% |
| 4i8oA02 | 3.30.160.690 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain | 0.50 | 34.0 | 3.09e-01 | 70.3% | 62.2% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5039434 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.81 | 54.0 | 3.22e-01 | 73.4% | 10.4% |
| 3189844 | 2485.1.1.12 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC | 0.74 | 51.0 | 3.54e-01 | 71.9% | 70.2% |
| 3976684 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.73 | 56.0 | 5.14e-01 | 81.2% | 73.8% |
| 4025888 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.72 | 49.0 | 4.39e-01 | 71.9% | 100.0% |
| 4117409 | 880.1.1.1 ↗ | a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind | 0.70 | 61.0 | 3.56e-01 | 95.3% | 25.1% |
| 3509786 | 2485.1.1.87 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › UBX7_N | 0.69 | 47.0 | 4.05e-01 | 71.9% | 93.3% |
| 3839435 | 330.9.1.0 ↗ | a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p | 0.67 | 46.0 | 4.45e-01 | 81.2% | 62.7% |
| 3685086 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.67 | 48.0 | 3.61e-01 | 76.6% | 84.5% |
| 4973097 | 2485.1.1.44 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_7 | 0.66 | 52.0 | 4.31e-01 | 85.9% | 93.9% |
| 3645374 | 64.1.1.8 ↗ | beta meanders › WW domain-like › WW domain › WW domain › DUF7028 | 0.66 | 42.0 | 4.15e-01 | 81.2% | 60.0% |
| 4517870 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.66 | 45.0 | 3.96e-01 | 71.9% | 64.2% |
| 5069814 | 5.1.4.40 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 | 0.64 | 52.0 | 3.42e-01 | 89.1% | 70.0% |
| 4077018 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.64 | 50.0 | 3.27e-01 | 85.9% | 68.7% |
| 3438124 | 2485.1.1.87 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › UBX7_N | 0.64 | 50.0 | 3.99e-01 | 85.9% | 86.2% |
| 4965851 | 4100.1.1.9 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 | 0.64 | 43.0 | 4.62e-01 | 76.6% | 81.8% |
| 4934826 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 48.0 | 3.18e-01 | 85.9% | 65.4% |
| 3923315 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.62 | 44.0 | 3.69e-01 | 76.6% | 88.7% |
| 3585126 | 5.1.5.76 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_NOL10_N | 0.61 | 53.0 | 3.29e-01 | 98.4% | 69.3% |
| 4117037 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.61 | 43.0 | 3.65e-01 | 76.6% | 83.5% |
| 4094199 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.60 | 47.0 | 3.02e-01 | 85.9% | 83.2% |
| 4989085 | 2485.1.1.37 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_2 | 0.60 | 48.0 | 3.97e-01 | 87.5% | 96.5% |
| 3500298 | 2485.1.1.87 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › UBX7_N | 0.60 | 47.0 | 3.83e-01 | 84.4% | 89.2% |
| 3803207 | 5.3.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II | 0.59 | 45.0 | 3.71e-01 | 81.2% | 69.6% |
| 3487125 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.59 | 44.0 | 3.82e-01 | 81.2% | 69.9% |
| 3566455 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.59 | 44.0 | 3.86e-01 | 81.2% | 71.0% |
| 4396346 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.59 | 43.0 | 3.75e-01 | 81.2% | 62.9% |
| 3819381 | 2485.1.1.4 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA | 0.58 | 46.0 | 3.55e-01 | 89.1% | 85.8% |
| 3319612 | 5.3.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II | 0.58 | 41.0 | 3.50e-01 | 76.6% | 77.4% |
| 3584922 | 5.1.4.39 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 | 0.58 | 50.0 | 3.37e-01 | 96.9% | 98.4% |
| 3695959 | 5.1.4.254 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N | 0.58 | 49.0 | 2.96e-01 | 95.3% | 49.5% |
| 3284045 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.57 | 42.0 | 3.77e-01 | 81.2% | 70.5% |
| 4979858 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.57 | 47.0 | 3.02e-01 | 95.3% | 83.9% |
| 3656728 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.56 | 41.0 | 4.22e-01 | 81.2% | 84.7% |
| 4039215 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.55 | 41.0 | 3.65e-01 | 81.2% | 68.4% |
| 3174248 | 4099.1.1.1 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD | 0.55 | 48.0 | 3.87e-01 | 98.4% | 70.2% |
| 4946641 | 2485.1.1.4 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA | 0.55 | 42.0 | 3.23e-01 | 84.4% | 87.1% |
| 3503277 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 41.0 | 4.11e-01 | 81.2% | 90.8% |
| 3953675 | 330.7.1.0 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain | 0.54 | 40.0 | 3.98e-01 | 81.2% | 84.6% |
| 3784883 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 44.0 | 2.92e-01 | 98.4% | 44.1% |
| 4204479 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 43.0 | 2.82e-01 | 89.1% | 60.7% |
| 3808930 | 5.3.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II | 0.52 | 37.0 | 2.98e-01 | 75.0% | 64.3% |
| 5059099 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.51 | 37.0 | 3.48e-01 | 82.8% | 75.0% |
| 3493556 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 36.0 | 2.95e-01 | 73.4% | 50.9% |
| 5025229 | 300.1.1.6 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB | 0.50 | 35.0 | 2.81e-01 | 73.4% | 40.6% |
D2
medium
residues 78-145
Domain cluster:
rep: SR-VP_0-2_scaffold_141_6063796_prodigal-single.1__X__X__00232__D75-139