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SR-VP_4-6_scaffold_141_4176636_prodigal-single.1__X__X__00164
Bact-VirSR-VP_4-6_scaffold_141_4176636_prodigal-single.1__X__X__00164
Identity
- Kingdom:
- phage
Quality
68.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-150
Domain cluster:
rep: CG10_big_fil_rev_8_21_14_0-10_scaffold_17_prodigal-single.1__X__X__00080__D4-138
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01743.27 best | PolyA_pol | 42.1 | 1.40e-10 | 85.3% | 94.4% |
D2
medium
residues 151-253
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h37A02 | 1.10.110.30 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › | 0.86 | 68.0 | 7.43e-01 | 82.5% | 100.0% |
| 1mivA02 | 1.10.110.30 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › | 0.84 | 72.0 | 7.44e-01 | 91.3% | 95.8% |
| 3aqlA02 | 1.10.3090.10 | Mainly Alpha › Orthogonal Bundle › cca-adding enzyme, domain 2 › cca-adding enzyme, domain 2 | 0.80 | 72.0 | 5.33e-01 | 99.0% | 40.3% |
| 4wbyA02 | 1.10.3090.10 | Mainly Alpha › Orthogonal Bundle › cca-adding enzyme, domain 2 › cca-adding enzyme, domain 2 | 0.75 | 69.0 | 5.23e-01 | 100.0% | 83.1% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.64 | 32.0 | 3.64e-01 | 83.5% | 64.0% |
| 2qtqB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.63 | 44.0 | 3.58e-01 | 72.8% | 78.7% |
| 2wzkA01 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.61 | 46.0 | 4.34e-01 | 80.6% | 95.3% |
| 2elcA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.60 | 37.0 | 4.35e-01 | 84.5% | 95.5% |
| 5dllA05 | 1.25.50.10 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain | 0.60 | 52.0 | 3.72e-01 | 98.1% | 39.6% |
| 2bb5A01 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.58 | 51.0 | 3.71e-01 | 100.0% | 49.7% |
| 2chnB03 | 1.20.58.460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like | 0.54 | 37.0 | 3.18e-01 | 70.9% | 63.9% |
| 1w99A01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.53 | 41.0 | 3.53e-01 | 83.5% | 93.1% |
| 2yinA03 | 1.20.58.740 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C | 0.53 | 38.0 | 3.63e-01 | 77.7% | 89.1% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.52 | 22.0 | 2.43e-01 | 70.9% | 42.4% |
| 7ys6A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.50 | 39.0 | 2.92e-01 | 83.5% | 70.0% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4800 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.88 | 78.0 | 5.61e-01 | 93.2% | 46.0% |
| 4037315 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.88 | 78.0 | 5.61e-01 | 92.2% | 47.1% |
| 4275218 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.88 | 77.0 | 5.63e-01 | 92.2% | 47.6% |
| 3195511 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.87 | 82.0 | 5.52e-01 | 99.0% | 69.4% |
| 3722642 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.87 | 81.0 | 5.60e-01 | 99.0% | 71.5% |
| 4196298 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.87 | 77.0 | 5.56e-01 | 93.2% | 47.5% |
| 3637478 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.86 | 82.0 | 5.51e-01 | 100.0% | 73.1% |
| 4167114 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.86 | 80.0 | 5.37e-01 | 98.1% | 74.6% |
| 3741993 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.86 | 80.0 | 5.44e-01 | 98.1% | 71.2% |
| 3788681 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.86 | 82.0 | 5.41e-01 | 100.0% | 68.7% |
| 3173464 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.86 | 81.0 | 5.43e-01 | 100.0% | 73.3% |
| 3741740 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.85 | 78.0 | 5.38e-01 | 96.1% | 71.4% |
| 3700974 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.85 | 80.0 | 5.35e-01 | 100.0% | 74.3% |
| 3593262 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.85 | 80.0 | 5.36e-01 | 100.0% | 49.3% |
| 3950512 | 131.2.1.1 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD,PolyA_pol_RNAbd | 0.84 | 80.0 | 5.47e-01 | 100.0% | 49.8% |
| 3454663 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.84 | 80.0 | 5.31e-01 | 100.0% | 71.8% |
| 3254102 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.84 | 79.0 | 5.44e-01 | 100.0% | 71.6% |
| 3253089 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.84 | 78.0 | 5.32e-01 | 99.0% | 71.1% |
| 2801534 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.83 | 78.0 | 5.76e-01 | 99.0% | 48.5% |
| 4944307 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.83 | 77.0 | 5.44e-01 | 98.1% | 72.9% |
| 4033097 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.82 | 77.0 | 5.60e-01 | 100.0% | 69.6% |
| 4044665 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.82 | 77.0 | 5.53e-01 | 98.1% | 47.8% |
| 3502691 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.82 | 77.0 | 5.57e-01 | 100.0% | 46.9% |
| 3429759 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.82 | 76.0 | 5.34e-01 | 100.0% | 62.0% |
| 4411977 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.82 | 76.0 | 5.49e-01 | 98.1% | 46.7% |
| 4583076 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.81 | 74.0 | 5.45e-01 | 97.1% | 70.2% |
| 4028563 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.81 | 76.0 | 5.17e-01 | 100.0% | 71.1% |
| 4134287 | 131.2.1.2 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_arg_C,PolyA_pol_RNAbd | 0.80 | 73.0 | 5.32e-01 | 99.0% | 39.2% |
| 3352880 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.80 | 73.0 | 5.41e-01 | 98.1% | 69.4% |
| 4156349 | 131.2.1.1 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD,PolyA_pol_RNAbd | 0.79 | 73.0 | 4.97e-01 | 98.1% | 75.2% |
| 1143835 | 131.2.1.1 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › HD,PolyA_pol_RNAbd | 0.79 | 73.0 | 5.27e-01 | 100.0% | 89.6% |
| 4090696 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.78 | 72.0 | 5.16e-01 | 99.0% | 72.1% |
| 4582450 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.78 | 72.0 | 5.19e-01 | 100.0% | 73.5% |
| 3789040 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 53.0 | 3.94e-01 | 97.1% | 57.1% |
| 3761396 | 109.4.1.1893 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ICE1_C | 0.59 | 50.0 | 3.52e-01 | 96.1% | 45.0% |
| 3895655 | 109.2.1.4 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Cobalamin_bind | 0.57 | 50.0 | 3.71e-01 | 100.0% | 47.4% |
| 3740946 | 109.4.1.1344 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28737 | 0.56 | 49.0 | 3.67e-01 | 100.0% | 46.5% |