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SR-VP_4-6_scaffold_141_4176636_prodigal-single.1__X__X__00244

Bact-Vir

SR-VP_4-6_scaffold_141_4176636_prodigal-single.1__X__X__00244

Identity

Kingdom:
phage

Quality

97.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-89
PDB
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.90 86.0 8.33e-01 100.0% 93.6%
1f60A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.88 84.0 7.70e-01 100.0% 94.4%
3mcaA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.87 83.0 7.77e-01 100.0% 92.2%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.83 76.0 7.43e-01 97.7% 93.6%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.82 69.0 6.91e-01 100.0% 88.5%
3e1yE01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.73 57.0 5.79e-01 89.7% 84.9%
8b6zA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.70 51.0 5.24e-01 83.9% 80.5%
1wosA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.69 53.0 5.40e-01 100.0% 83.7%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.69 50.0 4.60e-01 86.2% 59.5%
1g7sA04 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 51.0 5.14e-01 87.4% 77.5%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 56.0 5.38e-01 92.0% 77.2%
1wb1A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.66 49.0 4.90e-01 90.8% 76.1%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.66 52.0 5.11e-01 86.2% 79.6%
1g7sA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 49.0 4.62e-01 89.7% 75.0%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 48.0 4.12e-01 86.2% 90.1%
1n08A00 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.61 50.0 4.13e-01 89.7% 74.7%
2vbuA01 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.60 50.0 4.37e-01 90.8% 68.5%
1e62A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 49.0 4.34e-01 90.8% 74.2%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 49.0 4.82e-01 92.0% 84.0%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 42.0 3.72e-01 86.2% 50.4%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 47.0 4.02e-01 88.5% 92.9%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.58 42.0 4.05e-01 96.6% 66.7%
2fsdA00 2.60.40.2460 Mainly Beta › Sandwich › Immunoglobulin-like › Phage bIL170 RBP, head domain 0.57 38.0 3.57e-01 92.0% 54.5%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.57 41.0 3.51e-01 77.0% 75.2%
2fnqA01 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.55 47.0 4.39e-01 100.0% 77.9%
3zjaA01 2.60.40.1890 Mainly Beta › Sandwich › Immunoglobulin-like › PCu(A)C copper chaperone 0.53 45.0 4.31e-01 98.9% 89.6%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.42e-01 74.7% 92.5%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.53 44.0 4.08e-01 96.6% 73.0%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 39.0 3.93e-01 93.1% 80.5%
2wstA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.52 40.0 3.34e-01 87.4% 88.1%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.40e-01 75.9% 80.3%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.49e-01 78.2% 87.2%
1mi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.64e-01 79.3% 81.0%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.51 41.0 3.62e-01 88.5% 91.0%
3v98B01 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.51 43.0 3.96e-01 100.0% 72.6%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.50 35.0 3.87e-01 74.7% 95.5%
4gzuB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 37.0 3.66e-01 78.2% 95.6%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4930314 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.92 82.0 8.37e-01 100.0% 96.5%
3597995 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.92 82.0 7.48e-01 100.0% 74.5%
5046884 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.91 82.0 8.19e-01 100.0% 93.3%
3206575 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.91 81.0 7.39e-01 100.0% 74.5%
3393006 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.91 87.0 7.72e-01 100.0% 75.7%
3585142 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.90 86.0 7.57e-01 100.0% 72.5%
4150042 1.1.8.19 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_SelB 0.90 84.0 8.30e-01 100.0% 94.4%
3504502 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.90 86.0 7.70e-01 100.0% 78.1%
4071075 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.90 86.0 7.96e-01 100.0% 84.8%
3968633 1.1.8.19 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_SelB 0.90 83.0 8.22e-01 100.0% 94.4%
4514948 1.1.8.19 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_SelB 0.89 83.0 8.05e-01 100.0% 89.5%
5075927 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.89 80.0 8.03e-01 100.0% 94.3%
4966530 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.89 65.0 7.21e-01 80.5% 94.3%
4990285 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.89 78.0 7.76e-01 100.0% 91.0%
4983877 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.88 79.0 7.80e-01 100.0% 91.1%
3725596 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.88 78.0 6.82e-01 100.0% 65.6%
3166433 1.1.8.19 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_SelB 0.88 77.0 7.67e-01 100.0% 90.0%
3407712 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.88 79.0 7.54e-01 100.0% 84.7%
5073222 1.1.8.9 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › aSelB_III 0.88 83.0 7.86e-01 100.0% 96.0%
3566270 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.87 78.0 7.76e-01 100.0% 92.2%
3219717 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.87 79.0 7.88e-01 100.0% 93.3%
5024153 1.1.8.9 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › aSelB_III 0.87 82.0 7.78e-01 100.0% 93.0%
5083379 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.86 79.0 7.87e-01 97.7% 96.6%
5074592 1.1.8.9 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › aSelB_III 0.86 81.0 7.37e-01 100.0% 88.2%
3928362 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.85 80.0 7.63e-01 100.0% 87.8%
4999165 1.1.8.9 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › aSelB_III 0.84 79.0 7.21e-01 100.0% 89.1%
5046974 1.1.8.9 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › aSelB_III 0.83 78.0 7.23e-01 100.0% 91.4%
5020442 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.83 76.0 7.34e-01 97.7% 92.6%
4097656 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.82 71.0 6.85e-01 100.0% 83.2%
4030465 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.82 77.0 6.42e-01 100.0% 77.9%
5055336 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.82 75.0 7.40e-01 98.9% 93.3%
4614883 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.81 65.0 6.80e-01 100.0% 93.8%
4254437 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.81 69.0 6.98e-01 100.0% 92.9%
3513063 1.1.8.2 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › RIBIOP_C 0.80 74.0 6.09e-01 100.0% 67.3%
3717325 1.1.8.2 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › RIBIOP_C 0.80 74.0 5.84e-01 100.0% 56.5%
3777835 1.1.8.2 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › RIBIOP_C 0.80 74.0 4.71e-01 100.0% 25.3%
3640471 1.1.8.2 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › RIBIOP_C 0.79 73.0 6.22e-01 100.0% 68.1%
4317931 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.79 68.0 6.94e-01 100.0% 94.1%
4019258 1.1.8.2 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › RIBIOP_C 0.79 73.0 5.31e-01 100.0% 48.6%
3642890 1.1.8.2 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › RIBIOP_C 0.78 72.0 5.50e-01 100.0% 50.0%
3957622 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.78 63.0 6.43e-01 100.0% 89.2%
4024652 1.1.8.2 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › RIBIOP_C 0.78 72.0 5.58e-01 100.0% 56.7%
3717440 1.1.8.2 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › RIBIOP_C 0.78 72.0 5.83e-01 100.0% 65.2%
3742317 1.1.8.2 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › RIBIOP_C 0.77 71.0 5.84e-01 100.0% 65.3%
3921134 1.1.8.2 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › RIBIOP_C 0.77 70.0 5.33e-01 100.0% 48.2%
4886671 1.1.7.21 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RIBIOP_C 0.76 70.0 5.77e-01 100.0% 62.7%
3788035 1.1.8.2 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › RIBIOP_C 0.76 70.0 5.27e-01 100.0% 54.5%
4290531 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.76 69.0 6.88e-01 98.9% 94.4%
4988964 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.75 66.0 6.68e-01 97.7% 96.5%
3266016 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.75 67.0 6.69e-01 96.6% 96.7%
4944212 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.73 66.0 6.58e-01 100.0% 96.6%
4494894 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.73 67.0 6.33e-01 100.0% 85.6%
3492680 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.71 65.0 5.80e-01 100.0% 96.7%
4883586 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 48.0 4.85e-01 85.1% 70.9%
4072524 1.1.7.88 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.67 55.0 5.12e-01 89.7% 86.4%
4608778 1.1.7.107 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 0.65 52.0 4.67e-01 86.2% 61.7%
4981820 11.1.1.1406 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4352 0.61 52.0 4.82e-01 100.0% 74.2%
5016546 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 45.0 4.76e-01 81.6% 92.0%
4944288 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 48.0 4.55e-01 90.8% 77.1%
129 1.1.7.14 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CTP-dep_RFKase 0.58 48.0 4.19e-01 90.8% 68.7%
4927612 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 4.40e-01 95.4% 82.0%
3245639 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 47.0 4.14e-01 100.0% 95.7%
3608433 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.54 47.0 4.12e-01 100.0% 90.4%
4322675 220.1.1.121 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 0.54 39.0 3.59e-01 75.9% 70.9%
3236126 10.10.1.1 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.53 45.0 4.10e-01 100.0% 70.4%
3587689 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.88e-01 93.1% 96.7%
3540174 10.10.1.1 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.51 43.0 3.82e-01 100.0% 76.4%