←Back to structures
SR-VP_4-6_scaffold_141_4176636_prodigal-single.1__X__X__00248
Bact-VirSR-VP_4-6_scaffold_141_4176636_prodigal-single.1__X__X__00248
Identity
- Kingdom:
- phage
Quality
94.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-55
Domain cluster:
representative
CATH (63)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.83 | 67.0 | 5.75e-01 | 100.0% | 56.8% |
| 6g94A00 | 1.20.950.20 | Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C | 0.79 | 73.0 | 4.96e-01 | 100.0% | 34.3% |
| 1dtoA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.78 | 65.0 | 5.26e-01 | 100.0% | 49.0% |
| 4it4A02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.76 | 61.0 | 5.03e-01 | 100.0% | 50.5% |
| 3vbbE01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.73 | 66.0 | 4.98e-01 | 100.0% | 43.7% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 67.0 | 6.42e-01 | 100.0% | 88.3% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 64.0 | 4.82e-01 | 100.0% | 44.2% |
| 2lmgA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.70 | 60.0 | 5.34e-01 | 98.1% | 67.6% |
| 4p3fA00 | 1.10.3450.40 | Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › Signal recognition particle, SRP68 subunit, RNA-binding domain | 0.70 | 65.0 | 4.26e-01 | 100.0% | 27.5% |
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 59.0 | 5.00e-01 | 100.0% | 56.4% |
| 2k9pA00 | 1.10.287.920 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Pheromone alpha factor receptor. | 0.69 | 57.0 | 4.97e-01 | 98.1% | 60.0% |
| 1zhcA00 | 6.10.280.50 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 58.0 | 5.15e-01 | 100.0% | 65.8% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.69 | 64.0 | 5.17e-01 | 100.0% | 57.0% |
| 3kdqA00 | 6.10.320.10 | Special › Helix non-globular › Ferritin › | 0.69 | 60.0 | 4.32e-01 | 100.0% | 36.2% |
| 6tqfA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.66 | 48.0 | 2.88e-01 | 77.4% | 39.4% |
| 1yg2A02 | 6.10.140.190 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 57.0 | 4.73e-01 | 94.3% | 85.6% |
| 3au3A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.66 | 57.0 | 3.51e-01 | 100.0% | 16.9% |
| 2ch7A00 | 1.10.287.950 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein | 0.66 | 56.0 | 3.43e-01 | 94.3% | 100.0% |
| 6a95A01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.65 | 57.0 | 4.33e-01 | 100.0% | 45.2% |
| 1v9dB00 | 1.20.58.2220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain | 0.65 | 56.0 | 3.44e-01 | 100.0% | 16.5% |
| 2q5zB00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.65 | 55.0 | 4.66e-01 | 100.0% | 56.4% |
| 3lnnB03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.64 | 57.0 | 5.25e-01 | 98.1% | 97.0% |
| 2efkA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.64 | 55.0 | 3.54e-01 | 100.0% | 22.5% |
| 1hciA04 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 54.0 | 4.33e-01 | 100.0% | 47.4% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 54.0 | 4.38e-01 | 98.1% | 50.5% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.63 | 54.0 | 4.93e-01 | 96.2% | 93.0% |
| 2wauA02 | 1.20.58.830 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 55.0 | 4.23e-01 | 100.0% | 59.0% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.63 | 56.0 | 3.84e-01 | 100.0% | 29.5% |
| 3sb1A01 | 3.30.1370.140 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › HupH hydrogenase expression protein, C-terminal domain | 0.63 | 44.0 | 3.55e-01 | 73.6% | 72.7% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.62 | 52.0 | 4.14e-01 | 100.0% | 45.5% |
| 1wncB00 | 1.20.5.300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.62 | 54.0 | 4.75e-01 | 100.0% | 69.1% |
| 2jexA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.62 | 53.0 | 4.49e-01 | 100.0% | 56.2% |
| 4l3uA00 | 1.20.1480.40 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844 | 0.62 | 53.0 | 3.97e-01 | 94.3% | 47.2% |
| 2gtaA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.61 | 53.0 | 4.39e-01 | 100.0% | 57.7% |
| 3t0yA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 52.0 | 5.05e-01 | 100.0% | 85.0% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.61 | 54.0 | 5.19e-01 | 100.0% | 91.8% |
| 2w3cA02 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.61 | 51.0 | 3.26e-01 | 98.1% | 19.9% |
| 1s5jA04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.61 | 52.0 | 4.99e-01 | 98.1% | 91.8% |
| 3g67A00 | 1.10.287.950 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein | 0.60 | 52.0 | 3.48e-01 | 100.0% | 24.9% |
| 1l8dA00 | 1.10.287.510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.60 | 47.0 | 4.02e-01 | 100.0% | 49.5% |
| 8ab6B02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.60 | 45.0 | 3.03e-01 | 79.2% | 24.3% |
| 2ficB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.60 | 51.0 | 3.48e-01 | 100.0% | 36.8% |
| 3c4nA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.60 | 48.0 | 3.19e-01 | 92.5% | 96.6% |
| 1hciA03 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 51.0 | 4.00e-01 | 100.0% | 45.0% |
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.59 | 49.0 | 4.52e-01 | 100.0% | 74.0% |
| 2jrmA00 | 1.10.10.620 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ribosome modulation factor like domain | 0.59 | 39.0 | 3.77e-01 | 96.2% | 60.0% |
| 7smtA02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.58 | 50.0 | 3.56e-01 | 100.0% | 31.0% |
| 4gf0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 47.0 | 3.81e-01 | 100.0% | 45.1% |
| 3lbxB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 49.0 | 4.00e-01 | 100.0% | 50.5% |
| 3terA00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 49.0 | 3.87e-01 | 100.0% | 45.4% |
| 4a64C03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.57 | 48.0 | 3.84e-01 | 90.6% | 57.0% |
| 2qvoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 49.0 | 4.22e-01 | 100.0% | 98.9% |
| 7cosB02 | 1.10.1140.10 | Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 | 0.56 | 48.0 | 4.29e-01 | 100.0% | 87.0% |
| 2qkdA04 | 2.60.120.1040 | Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain | 0.55 | 44.0 | 3.42e-01 | 92.5% | 60.6% |
| 2j3wC00 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.55 | 46.0 | 3.41e-01 | 92.5% | 37.0% |
| 2pjwV00 | 1.20.5.1940 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 45.0 | 3.91e-01 | 100.0% | 60.4% |
| 1bvp103 | 1.10.170.10 | Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 3 › Bluetongue Virus 10, subunit 1, domain 3 | 0.54 | 43.0 | 3.57e-01 | 94.3% | 49.0% |
| 4m52A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 45.0 | 2.98e-01 | 92.5% | 22.5% |
| 3w6bB00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.54 | 46.0 | 3.38e-01 | 100.0% | 76.5% |
| 1v8bA01 | 3.40.50.1480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Adenosylhomocysteinase-like | 0.54 | 45.0 | 2.82e-01 | 100.0% | 19.4% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 45.0 | 4.25e-01 | 100.0% | 83.1% |
| 1kyoF00 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.51 | 42.0 | 3.89e-01 | 100.0% | 73.0% |
| 3ic9A02 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.51 | 44.0 | 4.00e-01 | 94.3% | 72.9% |
ECOD (71)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3626122 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.86 | 68.0 | 6.57e-01 | 100.0% | 76.7% |
| 3438819 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.85 | 78.0 | 7.43e-01 | 100.0% | 95.0% |
| 3733706 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.83 | 74.0 | 4.45e-01 | 96.2% | 16.5% |
| 4016292 | 192.2.1.18 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING | 0.82 | 65.0 | 4.78e-01 | 100.0% | 34.1% |
| 4273738 | 5069.1.1.2 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ni_hydr_CYTB | 0.81 | 74.0 | 4.71e-01 | 100.0% | 24.9% |
| 3722239 | 2003.1.2.6 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 | 0.80 | 74.0 | 4.26e-01 | 100.0% | 12.7% |
| 3809724 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.80 | 69.0 | 4.97e-01 | 100.0% | 35.7% |
| 3385713 | 5069.1.1.2 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ni_hydr_CYTB | 0.79 | 71.0 | 4.64e-01 | 100.0% | 27.4% |
| 4984959 | 3758.1.1.113 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › Rad50_zn_hook | 0.78 | 72.0 | 4.28e-01 | 100.0% | 17.3% |
| 3702110 | 593.1.1.0 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like | 0.78 | 69.0 | 4.34e-01 | 98.1% | 37.2% |
| 3379773 | 109.4.1.43 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SAC3_GANP | 0.78 | 68.0 | 4.07e-01 | 100.0% | 15.6% |
| 4425759 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.77 | 39.0 | 2.98e-01 | 79.2% | 23.6% |
| 3705990 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 46.0 | 4.04e-01 | 86.8% | 44.0% |
| 5064040 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.75 | 59.0 | 3.91e-01 | 100.0% | 22.4% |
| 3642639 | 3922.1.1.269 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Rad50_zn_hook | 0.74 | 65.0 | 5.21e-01 | 100.0% | 54.3% |
| 4196235 | 159.1.1.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG | 0.73 | 57.0 | 4.68e-01 | 100.0% | 46.0% |
| 3309008 | 375.1.1.246 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rad50_zn_hook | 0.73 | 64.0 | 5.15e-01 | 100.0% | 56.2% |
| 3731535 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.73 | 68.0 | 5.35e-01 | 100.0% | 53.0% |
| 3714005 | 5054.1.1.61 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › ELO | 0.73 | 60.0 | 3.86e-01 | 92.5% | 52.5% |
| 3601023 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.73 | 66.0 | 4.33e-01 | 100.0% | 25.2% |
| 4947568 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.72 | 67.0 | 4.43e-01 | 100.0% | 82.6% |
| 4014485 | 5044.1.1.0 ↗ | extended segments › PsbZ-like › PsbZ-like › PsbZ-like | 0.72 | 66.0 | 5.33e-01 | 100.0% | 55.8% |
| 5004597 | 5069.1.1.56 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › PF27518 | 0.72 | 65.0 | 4.18e-01 | 100.0% | 23.1% |
| 5029796 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.72 | 66.0 | 4.93e-01 | 100.0% | 70.8% |
| 4320634 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.72 | 66.0 | 4.02e-01 | 100.0% | 69.5% |
| 3804939 | 192.2.1.3 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Rad50_zn_hook | 0.71 | 62.0 | 4.61e-01 | 100.0% | 40.7% |
| 4553515 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.71 | 51.0 | 4.29e-01 | 88.7% | 47.1% |
| 5082442 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.71 | 64.0 | 4.73e-01 | 100.0% | 67.7% |
| 3937187 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.71 | 59.0 | 4.81e-01 | 100.0% | 48.2% |
| 4524125 | 1037.1.1.1 ↗ | alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT | 0.70 | 64.0 | 4.05e-01 | 100.0% | 21.6% |
| 5064397 | 5086.1.1.231 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Rad50_zn_hook | 0.70 | 63.0 | 4.20e-01 | 100.0% | 30.8% |
| 3847307 | 3939.1.1.319 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › Rad50_zn_hook | 0.69 | 64.0 | 3.63e-01 | 100.0% | 61.5% |
| 3615252 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.68 | 60.0 | 3.60e-01 | 100.0% | 15.4% |
| 3894011 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.67 | 53.0 | 3.52e-01 | 100.0% | 21.9% |
| 3441518 | 3559.1.1.11 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Med28 | 0.67 | 59.0 | 4.53e-01 | 100.0% | 44.2% |
| 3859550 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.66 | 55.0 | 4.40e-01 | 100.0% | 45.8% |
| 3397264 | 4193.1.1.0 ↗ | alpha arrays › RUN domain › RUN domain › RUN domain | 0.66 | 54.0 | 3.77e-01 | 90.6% | 82.4% |
| 3301795 | 4207.1.1.2 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › Med28 | 0.66 | 60.0 | 4.50e-01 | 100.0% | 44.2% |
| 3739454 | 192.5.1.38 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › NEDD4_Bsd2 | 0.66 | 58.0 | 4.62e-01 | 100.0% | 50.5% |
| 5081618 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.65 | 54.0 | 4.29e-01 | 100.0% | 44.2% |
| 4963777 | 604.12.1.137 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF373 | 0.65 | 54.0 | 4.05e-01 | 100.0% | 36.7% |
| 4007605 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 56.0 | 5.43e-01 | 100.0% | 100.0% |
| 4942387 | 632.7.1.66 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › DUF2304 | 0.64 | 53.0 | 4.16e-01 | 92.5% | 44.5% |
| 4008053 | 4168.1.1.7 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain › PF26769 | 0.63 | 56.0 | 3.92e-01 | 100.0% | 32.7% |
| 3579266 | 5055.1.1.11 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › Cation_ATPase_N | 0.63 | 52.0 | 4.69e-01 | 100.0% | 66.7% |
| 3740053 | 4177.1.1.27 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_4 | 0.63 | 53.0 | 3.41e-01 | 100.0% | 19.6% |
| 4531337 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.63 | 54.0 | 4.17e-01 | 96.2% | 60.9% |
| 4976290 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.63 | 55.0 | 4.82e-01 | 100.0% | 76.2% |
| 3291034 | 3271.1.1.1 ↗ | alpha arrays › CdiA C-terminal nuclease domain › CdiA C-terminal nuclease domain › CdiA C-terminal nuclease domain › Ntox28 | 0.62 | 49.0 | 4.17e-01 | 100.0% | 51.6% |
| 3199866 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.62 | 54.0 | 3.50e-01 | 100.0% | 21.6% |
| 3428908 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 50.0 | 2.85e-01 | 98.1% | 7.9% |
| 3787150 | 611.3.1.0 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.62 | 50.0 | 4.11e-01 | 100.0% | 47.6% |
| 3403227 | 192.8.1.465 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › CHD5 | 0.62 | 54.0 | 4.29e-01 | 100.0% | 49.1% |
| 3414844 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.62 | 53.0 | 3.92e-01 | 100.0% | 36.6% |
| 3880840 | 375.1.1.246 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rad50_zn_hook | 0.61 | 50.0 | 4.23e-01 | 100.0% | 53.0% |
| 4478603 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.61 | 52.0 | 4.18e-01 | 96.2% | 57.1% |
| 4020856 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.61 | 55.0 | 4.02e-01 | 100.0% | 43.7% |
| 3839681 | 138.1.1.20 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › PF30817 | 0.60 | 54.0 | 4.08e-01 | 100.0% | 64.8% |
| 5018716 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.59 | 50.0 | 4.63e-01 | 100.0% | 75.7% |
| 4673 | 192.7.1.4 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C | 0.59 | 48.0 | 4.58e-01 | 100.0% | 80.3% |
| None | — | 0.59 | 50.0 | 3.13e-01 | 98.1% | 90.3% | |
| 3399005 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.59 | 52.0 | 4.37e-01 | 100.0% | 100.0% |
| 3909017 | 192.5.1.1 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 | 0.58 | 48.0 | 4.18e-01 | 100.0% | 58.9% |
| 3244102 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.57 | 47.0 | 3.89e-01 | 100.0% | 67.3% |
| 3570582 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.57 | 47.0 | 3.49e-01 | 98.1% | 34.7% |
| 4541653 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.56 | 48.0 | 4.05e-01 | 100.0% | 64.2% |
| 3259913 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.55 | 40.0 | 3.70e-01 | 83.0% | 84.0% |
| 4948520 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.54 | 46.0 | 2.70e-01 | 92.5% | 12.0% |
| 3263157 | 312.1.1.7 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › ATP_transf | 0.54 | 43.0 | 3.08e-01 | 100.0% | 26.9% |
| 3331225 | 5042.1.1.0 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region | 0.52 | 47.0 | 4.23e-01 | 98.1% | 92.9% |
| 4826636 | 5037.1.1.2 ↗ | alpha bundles › Bacterial photosystem II reaction centre L and M subunits-like › Bacterial photosystem II reaction centre L and M subunits-like › Bacterial photosystem II reaction centre L and M subunits-like › PsaA_PsaB | 0.52 | 44.0 | 3.00e-01 | 100.0% | 51.7% |