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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00075
Bact-VirSR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00075
Identity
- Kingdom:
- phage
Quality
81.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-75
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2p0tA01 | 1.10.60.30 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains | 0.62 | 45.0 | 4.51e-01 | 97.3% | 75.0% |
| 1tfkB00 | 1.20.120.650 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Colicin D | 0.62 | 49.0 | 4.72e-01 | 87.8% | 98.8% |
| 7wu8B01 | 1.20.1160.20 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › | 0.60 | 37.0 | 3.71e-01 | 81.1% | 58.2% |
| 1j09A05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.59 | 33.0 | 3.06e-01 | 95.9% | 39.8% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.59 | 42.0 | 4.05e-01 | 100.0% | 64.8% |
| 2kp7A01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.57 | 33.0 | 3.38e-01 | 81.1% | 55.4% |
| 6a95A01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.55 | 44.0 | 3.74e-01 | 89.2% | 81.0% |
| 3hymL00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 40.0 | 2.77e-01 | 81.1% | 43.1% |
| 4iuwA02 | 1.10.1380.10 | Mainly Alpha › Orthogonal Bundle › Neutral endopeptidase; domain 2 › Neutral endopeptidase , domain2 | 0.54 | 45.0 | 3.03e-01 | 98.6% | 85.8% |
| 3wfdB00 | 1.20.210.10 | Mainly Alpha › Up-down Bundle › Cytochrome C Oxidase; Chain A › Cytochrome c oxidase-like, subunit I domain | 0.53 | 40.0 | 2.55e-01 | 85.1% | 48.6% |
| 1jswA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.51 | 44.0 | 3.64e-01 | 100.0% | 52.6% |
| 1sdiA00 | 1.10.3890.10 | Mainly Alpha › Orthogonal Bundle › YcfC-like › HflD-like | 0.51 | 44.0 | 3.22e-01 | 100.0% | 61.0% |
| 3bcgA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 43.0 | 3.21e-01 | 100.0% | 61.8% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3290877 | 601.5.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Colicin D immunity protein › Colicin D immunity protein › Colicin_immun | 0.66 | 53.0 | 5.14e-01 | 87.8% | 98.8% |
| 4541653 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.66 | 44.0 | 4.14e-01 | 70.3% | 74.7% |
| 4014858 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.54 | 41.0 | 3.69e-01 | 100.0% | 56.4% |
| 3165166 | 5069.1.1.26 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › NrfD | 0.54 | 46.0 | 4.16e-01 | 100.0% | 79.0% |
| 3173949 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.52 | 43.0 | 2.92e-01 | 95.9% | 58.2% |
| 3701212 | 630.1.1.1 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › Rubis-subs-bind | 0.51 | 43.0 | 3.25e-01 | 93.2% | 84.0% |