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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00076
Bact-VirSR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00076
Identity
- Kingdom:
- phage
Quality
88.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-114
Domain cluster:
rep: MK493321.1__QBQ74908.1__RW110999_028__00023__D22-112
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vk1A01 | 3.90.1530.10 | Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain | 0.70 | 51.0 | 5.33e-01 | 93.8% | 83.3% |
| 1xw3A01 | 3.90.1530.10 | Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain | 0.66 | 51.0 | 5.42e-01 | 88.4% | 95.8% |
| 3fleA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 40.0 | 3.16e-01 | 85.7% | 33.7% |
| 4r2xD00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.53 | 37.0 | 2.92e-01 | 72.3% | 69.1% |
| 3lp5A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 38.0 | 3.02e-01 | 76.8% | 84.8% |
| 4pr3A00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.53 | 37.0 | 3.12e-01 | 74.1% | 73.2% |
| 2ywmA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 36.0 | 3.61e-01 | 74.1% | 90.4% |
| 7drdG01 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.51 | 41.0 | 3.12e-01 | 86.6% | 90.2% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5030163 | 876.1.1.4 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 | 0.75 | 65.0 | 6.53e-01 | 92.9% | 100.0% |
| 5081788 | 876.1.1.4 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 | 0.73 | 64.0 | 6.54e-01 | 96.4% | 100.0% |
| 4974679 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.70 | 50.0 | 5.19e-01 | 92.0% | 78.8% |
| 4929132 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.70 | 56.0 | 5.98e-01 | 92.9% | 100.0% |
| 2061501 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.70 | 51.0 | 5.42e-01 | 92.0% | 86.9% |
| 3839086 | 876.1.1.4 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 | 0.70 | 60.0 | 4.86e-01 | 93.8% | 100.0% |
| 3723395 | 876.1.1.6 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › PF29418 | 0.69 | 64.0 | 6.26e-01 | 100.0% | 97.5% |
| 3283857 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.69 | 48.0 | 5.54e-01 | 77.7% | 100.0% |
| 4931651 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.69 | 51.0 | 5.53e-01 | 92.0% | 92.6% |
| 3278076 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.68 | 52.0 | 5.65e-01 | 88.4% | 100.0% |
| 5069965 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.68 | 56.0 | 5.45e-01 | 92.0% | 79.2% |
| 3283211 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.67 | 55.0 | 5.14e-01 | 87.5% | 83.6% |
| 4370861 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.67 | 57.0 | 5.75e-01 | 100.0% | 93.6% |
| 3942579 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.66 | 43.0 | 5.07e-01 | 77.7% | 100.0% |
| 3948471 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.65 | 58.0 | 5.76e-01 | 100.0% | 95.7% |
| 3772471 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.64 | 47.0 | 5.11e-01 | 84.8% | 94.4% |
| 3602844 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.64 | 51.0 | 5.03e-01 | 92.0% | 80.0% |
| 3701649 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.62 | 51.0 | 5.39e-01 | 92.0% | 100.0% |
| 85732 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.60 | 49.0 | 4.87e-01 | 92.0% | 83.5% |
| 4947338 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.58 | 51.0 | 4.33e-01 | 97.3% | 88.9% |
| 3178377 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.56 | 46.0 | 4.47e-01 | 91.1% | 91.2% |
| 4965611 | 2011.2.1.7 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 | 0.55 | 40.0 | 3.15e-01 | 75.9% | 69.6% |
| 5001592 | 2004.1.1.119 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA | 0.52 | 38.0 | 3.28e-01 | 77.7% | 84.9% |
D2
high
residues 120-182
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3eu8A00 | 1.50.10.140 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Glycoside hydrolase 144 (GH144) | 0.57 | 44.0 | 2.70e-01 | 85.7% | 29.9% |
| 4lvnA00 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.56 | 49.0 | 3.09e-01 | 100.0% | 43.2% |
| 2g3bA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 40.0 | 2.92e-01 | 79.4% | 44.9% |
| 1jwjA01 | 3.90.340.10 | Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 | 0.54 | 40.0 | 3.00e-01 | 81.0% | 60.4% |
| 7r0kA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.53 | 41.0 | 3.22e-01 | 93.7% | 57.2% |
| 1qduB00 | 3.30.70.1470 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Caspase-like | 0.52 | 37.0 | 3.33e-01 | 73.0% | 71.6% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3707503 | 101.1.10.20 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB_C_2 | 0.59 | 46.0 | 3.83e-01 | 100.0% | 46.4% |
| 4059386 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.57 | 49.0 | 4.87e-01 | 96.8% | 96.9% |
| 3717093 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.55 | 43.0 | 4.22e-01 | 93.7% | 85.7% |
| 4162387 | 101.1.1.115 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SWC7 | 0.54 | 45.0 | 3.64e-01 | 93.7% | 51.2% |
| 3708642 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 37.0 | 2.94e-01 | 73.0% | 36.9% |
| 4274063 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.51 | 35.0 | 2.81e-01 | 74.6% | 37.5% |
| 3637397 | 101.1.2.147 ↗ | alpha arrays › HTH › HTH › winged helix domain › ORC4_C | 0.50 | 39.0 | 3.18e-01 | 93.7% | 85.8% |
| 3328714 | 101.1.21.2 ↗ | alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › PF29140 | 0.50 | 44.0 | 2.90e-01 | 100.0% | 38.6% |
| 3232086 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.50 | 41.0 | 3.68e-01 | 93.7% | 82.1% |