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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00080
Bact-VirSR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00080
Identity
- Kingdom:
- phage
Quality
93.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-109
Domain cluster:
rep: NC_030930.1__YP_009275603.1__BH770_gp36__00036__D19-105
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 30.0 | 4.14e-01 | 92.2% | 87.8% |
| 2g1lA00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.61 | 37.0 | 3.79e-01 | 77.7% | 61.2% |
| 1tmxB00 | 2.60.130.10 | Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase | 0.59 | 47.0 | 3.51e-01 | 88.3% | 61.7% |
| 2zadA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.58 | 44.0 | 4.33e-01 | 81.6% | 91.2% |
| 1lomA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.58 | 30.0 | 3.04e-01 | 75.7% | 48.5% |
| 2boyF00 | 2.60.130.10 | Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase | 0.58 | 47.0 | 3.60e-01 | 89.3% | 66.9% |
| 1tkkA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.57 | 44.0 | 4.27e-01 | 81.6% | 93.9% |
| 3ge2A00 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.56 | 41.0 | 4.36e-01 | 95.1% | 88.8% |
| 3dg6A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 43.0 | 4.17e-01 | 81.6% | 92.1% |
| 3q45A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 46.0 | 4.28e-01 | 90.3% | 96.8% |
| 3ro6C01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.54 | 41.0 | 4.13e-01 | 80.6% | 93.4% |
| 1bqgA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.54 | 42.0 | 3.79e-01 | 81.6% | 73.2% |
| 2xcmC00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 30.0 | 3.16e-01 | 88.3% | 58.7% |
| 2d42A02 | 3.10.450.380 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 32.0 | 3.84e-01 | 73.8% | 92.3% |
| 2gdqA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.53 | 41.0 | 4.12e-01 | 82.5% | 92.5% |
| 4egvA02 | 2.40.50.840 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 33.0 | 3.82e-01 | 92.2% | 88.0% |
| 3pcrA01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.52 | 30.0 | 3.14e-01 | 74.8% | 61.7% |
| 6pxcA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.52 | 39.0 | 3.93e-01 | 96.1% | 81.7% |
| 1v3eA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.51 | 45.0 | 2.98e-01 | 97.1% | 48.0% |
| 1ykdB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.50 | 45.0 | 3.72e-01 | 100.0% | 61.5% |
| 2oq8A00 | 2.60.40.2930 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 39.0 | 3.41e-01 | 81.6% | 91.3% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4028996 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.69 | 37.0 | 3.27e-01 | 92.2% | 36.6% |
| 4988423 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.65 | 40.0 | 4.47e-01 | 100.0% | 78.8% |
| 3933293 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.64 | 31.0 | 4.01e-01 | 89.3% | 81.0% |
| 4432262 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.61 | 33.0 | 3.16e-01 | 88.3% | 44.2% |
| 4961432 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.60 | 39.0 | 4.09e-01 | 92.2% | 71.6% |
| 3224914 | 220.1.1.52 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C | 0.58 | 43.0 | 4.21e-01 | 96.1% | 69.6% |
| 3281114 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.57 | 44.0 | 3.96e-01 | 81.6% | 80.0% |
| 4961726 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.54 | 42.0 | 4.12e-01 | 82.5% | 98.2% |
| 3239000 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 36.0 | 3.36e-01 | 92.2% | 56.2% |
| 3606892 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.53 | 41.0 | 3.82e-01 | 81.6% | 86.4% |
| 3629780 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.51 | 43.0 | 2.97e-01 | 92.2% | 43.8% |
| 4024963 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.51 | 41.0 | 3.46e-01 | 90.3% | 84.2% |