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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00081

Bact-Vir

SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00081

Identity

Kingdom:
phage

Quality

54.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-100
PDB
Domain cluster: rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00233__D118-220
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e7lA01 3.40.1800.10 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases 0.70 48.0 5.15e-01 70.5% 82.5%
1x4uA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.59 37.0 4.33e-01 95.8% 88.4%
2y43A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.59 31.0 3.30e-01 97.9% 55.7%
1z2qA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 38.0 4.01e-01 98.9% 76.2%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.91e-01 88.4% 83.5%
2yjgA02 3.40.50.11440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain 0.50 42.0 3.27e-01 95.8% 88.8%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 36.0 3.61e-01 90.5% 73.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5070853 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.77 53.0 5.62e-01 70.5% 83.5%
3590055 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.72 62.0 5.80e-01 91.6% 91.3%
3286852 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.71 49.0 4.85e-01 70.5% 72.0%
1291965 378.1.1.16 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DraIII 0.68 55.0 4.31e-01 89.5% 74.0%
3249964 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.66 52.0 5.67e-01 82.1% 98.8%
4370946 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.66 48.0 3.92e-01 81.1% 42.4%
3907189 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.59 38.0 3.84e-01 100.0% 65.3%
3764524 632.6.1.7 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › RH_dom 0.55 39.0 3.96e-01 100.0% 74.7%
3543123 4044.1.1.12 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › RH_dom 0.55 39.0 4.04e-01 100.0% 78.9%
158761 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.53 38.0 4.04e-01 98.9% 84.5%
3280330 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 44.0 2.97e-01 93.7% 76.6%
3611194 376.1.3.32 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom 0.52 39.0 3.82e-01 100.0% 72.1%
3926400 376.1.3.32 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom 0.52 38.0 3.82e-01 100.0% 74.0%
3781990 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 30.0 3.17e-01 76.8% 65.9%
D2 medium residues 101-155
PDB
D3 medium residues 156-232
PDB