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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00082
Bact-VirSR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00082
Identity
- Kingdom:
- phage
Quality
81.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 50-158
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nugB02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 39.0 | 4.69e-01 | 80.7% | 97.2% |
| 1di2A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 38.0 | 4.61e-01 | 79.8% | 98.6% |
| 7r97A02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 38.0 | 4.59e-01 | 77.1% | 100.0% |
| 1x49A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 37.0 | 4.45e-01 | 79.8% | 97.1% |
| 2khxA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 40.0 | 4.51e-01 | 92.7% | 98.7% |
| 4wyqB00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 38.0 | 4.43e-01 | 84.4% | 100.0% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 33.0 | 3.81e-01 | 89.0% | 82.9% |
| 4bs9A05 | 3.30.160.660 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 39.0 | 3.93e-01 | 89.9% | 71.1% |
| 5jenA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.55 | 37.0 | 3.69e-01 | 74.3% | 66.7% |
| 2l2mA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 35.0 | 4.10e-01 | 84.4% | 98.6% |
| 3g0kA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 38.0 | 3.63e-01 | 88.1% | 61.7% |
| 3gd6A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.54 | 39.0 | 3.61e-01 | 76.1% | 79.6% |
| 3blzA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 38.0 | 3.70e-01 | 92.7% | 65.3% |
| 5aigA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 41.0 | 3.98e-01 | 90.8% | 73.4% |
| 2k4vA00 | 3.30.160.370 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 | 0.52 | 34.0 | 3.24e-01 | 78.0% | 55.2% |
| 3cygA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.51 | 37.0 | 3.59e-01 | 75.2% | 68.1% |
| 3lygA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 38.0 | 3.72e-01 | 89.0% | 70.8% |
| 2bngC00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 42.0 | 3.93e-01 | 96.3% | 70.7% |
| 2imjD01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 38.0 | 3.56e-01 | 98.2% | 62.0% |
| 7f13A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 38.0 | 3.60e-01 | 90.8% | 63.2% |
| 4ntqB00 | 3.30.2450.20 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.50 | 34.0 | 3.17e-01 | 75.2% | 52.4% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4944090 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.68 | 39.0 | 3.89e-01 | 77.1% | 55.5% |
| 4501226 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.68 | 40.0 | 5.13e-01 | 79.8% | 100.0% |
| 3246974 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.65 | 45.0 | 4.66e-01 | 86.2% | 77.0% |
| 3263815 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.65 | 45.0 | 4.93e-01 | 84.4% | 87.8% |
| 5041289 | 2484.1.1.22 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 | 0.64 | 38.0 | 3.22e-01 | 73.4% | 35.6% |
| 3387925 | 243.4.1.0 ↗ | a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like | 0.63 | 35.0 | 4.26e-01 | 71.6% | 89.2% |
| 5016535 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.61 | 37.0 | 4.24e-01 | 76.1% | 82.5% |
| 4260316 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.59 | 38.0 | 4.30e-01 | 80.7% | 87.5% |
| 4013685 | 7504.1.1.0 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like | 0.58 | 47.0 | 4.01e-01 | 87.2% | 91.7% |
| 3618566 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.58 | 44.0 | 4.40e-01 | 94.5% | 78.2% |
| 3284847 | 243.1.1.80 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 | 0.58 | 38.0 | 3.88e-01 | 80.7% | 66.7% |
| 3017675 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 38.0 | 4.32e-01 | 82.6% | 96.0% |
| 3592741 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 35.0 | 3.92e-01 | 78.9% | 81.2% |
| 3502940 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.55 | 37.0 | 3.87e-01 | 85.3% | 74.0% |
| 3417357 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.55 | 38.0 | 3.33e-01 | 70.6% | 84.8% |
| 3789178 | 5.1.2.20 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BMT | 0.55 | 48.0 | 3.08e-01 | 96.3% | 84.3% |
| 3739446 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.55 | 41.0 | 4.29e-01 | 94.5% | 90.5% |
| 3736149 | 511.1.1.0 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain | 0.55 | 44.0 | 3.88e-01 | 86.2% | 98.8% |
| 3752886 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 38.0 | 3.88e-01 | 89.0% | 75.2% |
| 1562270 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.54 | 41.0 | 4.00e-01 | 91.7% | 72.6% |
| 3543887 | 330.1.1.6 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C | 0.54 | 39.0 | 4.02e-01 | 88.1% | 81.0% |
| 5056130 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.54 | 37.0 | 3.95e-01 | 81.7% | 82.1% |
| 4969137 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.54 | 32.0 | 3.67e-01 | 76.1% | 87.1% |
| 3761536 | 11.1.1.1209 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TMEM131L_2nd, Ig_TMEM131L_3 | 0.54 | 39.0 | 2.97e-01 | 78.0% | 52.3% |
| 3672774 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.53 | 39.0 | 3.45e-01 | 78.0% | 57.1% |
| 1489344 | 330.10.1.1 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO | 0.53 | 41.0 | 3.85e-01 | 90.8% | 67.4% |
| 3254046 | 243.1.1.9 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF1348 | 0.52 | 40.0 | 3.62e-01 | 94.5% | 58.4% |
| 3940074 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 35.0 | 3.24e-01 | 76.1% | 52.1% |
| 3989344 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.52 | 37.0 | 3.55e-01 | 86.2% | 64.0% |
| 5071336 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.52 | 36.0 | 3.45e-01 | 87.2% | 60.9% |
| 3741544 | 11.1.1.44 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 | 0.52 | 40.0 | 4.00e-01 | 82.6% | 86.1% |
| 3957839 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.51 | 38.0 | 3.67e-01 | 89.9% | 66.9% |
| 3859660 | 11.2.1.22 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › CC2D2AN-C2 | 0.51 | 41.0 | 3.49e-01 | 86.2% | 62.2% |
| 3925737 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 38.0 | 3.61e-01 | 78.9% | 72.6% |
| 5048351 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.51 | 39.0 | 3.61e-01 | 89.0% | 62.1% |
| 4483150 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.51 | 37.0 | 3.34e-01 | 78.0% | 85.6% |
| 3990341 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.51 | 36.0 | 3.69e-01 | 80.7% | 76.2% |
| 3964372 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.50 | 38.0 | 3.22e-01 | 80.7% | 72.3% |
| 3197280 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.50 | 35.0 | 2.52e-01 | 81.7% | 22.9% |