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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00092
Bact-VirSR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00092
Identity
- Kingdom:
- phage
Quality
49.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 152-200_219-348
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hxmB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.71 | 39.0 | 4.56e-01 | 100.0% | 75.2% |
| 2xg5A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 25.0 | 3.28e-01 | 100.0% | 72.8% |
| 2qngA01 | 2.60.60.30 | Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains | 0.56 | 31.0 | 3.23e-01 | 97.8% | 55.8% |
| 1rl1A00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 28.0 | 3.72e-01 | 96.6% | 93.5% |
| 1lfwA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 29.0 | 3.65e-01 | 95.5% | 90.6% |
| 4aw7A03 | 2.60.120.1200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 31.0 | 3.69e-01 | 100.0% | 86.1% |
| 1el6A03 | 3.90.1160.10 | Alpha Beta › Alpha-Beta Complex › Baseplate Structural Protein Gp11; Chain: A, domain 3 › Baseplate structural protein gp11, finger domain | 0.51 | 28.0 | 3.48e-01 | 96.6% | 85.3% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1389350 | 11.1.1.26 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_glycop_D | 0.58 | 37.0 | 3.80e-01 | 100.0% | 64.2% |
| 3321408 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.58 | 31.0 | 4.04e-01 | 98.3% | 95.7% |
| 3507753 | 11.1.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Zona_pellucida | 0.58 | 31.0 | 3.75e-01 | 99.4% | 77.5% |
| 3618777 | 11.1.1.842 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_C | 0.55 | 32.0 | 3.93e-01 | 100.0% | 91.7% |
| 3405797 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.55 | 30.0 | 3.88e-01 | 98.9% | 96.8% |
| 5023897 | 304.57.1.1 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 | 0.55 | 27.0 | 3.23e-01 | 96.1% | 68.7% |
| 3518354 | 11.1.1.842 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_C | 0.54 | 32.0 | 3.19e-01 | 100.0% | 54.6% |
| 4000485 | 319.1.1.20 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › SF3A2 | 0.54 | 28.0 | 3.56e-01 | 93.3% | 82.7% |
| 3236132 | 11.1.1.842 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_C | 0.54 | 31.0 | 3.37e-01 | 100.0% | 65.2% |
| 3978064 | 304.51.1.3 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_assoc | 0.53 | 24.0 | 3.37e-01 | 95.0% | 90.0% |
| 3275715 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.53 | 28.0 | 3.61e-01 | 93.9% | 90.0% |
| 3924851 | 319.2.1.1 ↗ | beta sandwiches › HSP20-like › Pre-mRNA-splicing factor PRP11 C-terminal domain › Pre-mRNA-splicing factor PRP11 C-terminal domain › SF3A2 | 0.53 | 30.0 | 3.54e-01 | 93.3% | 77.7% |
| 4976045 | 304.57.1.1 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 | 0.52 | 25.0 | 3.12e-01 | 96.1% | 70.9% |
| 3932986 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.51 | 30.0 | 3.73e-01 | 100.0% | 94.5% |
| 3827633 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.50 | 31.0 | 3.58e-01 | 98.3% | 83.8% |
D2
medium
residues 18-123
D3
medium
residues 565-618
D4
medium
residues 619-734
D5
medium
residues 735-822
D6
medium
residues 943-961_982-1011