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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00115
Bact-VirSR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00115
Identity
- Kingdom:
- phage
Quality
65.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 34-141
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gf4A00 | 1.20.1270.110 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 | 0.70 | 41.0 | 4.55e-01 | 88.9% | 71.6% |
| 1f68A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.67 | 48.0 | 4.94e-01 | 75.0% | 100.0% |
| 2wcrB00 | 3.10.129.140 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Helicobacter TNF-alpha-Inducing protein | 0.66 | 50.0 | 4.51e-01 | 79.6% | 97.3% |
| 3tbiB02 | 6.10.140.1670 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 42.0 | 4.38e-01 | 84.3% | 70.0% |
| 3n00A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.65 | 51.0 | 4.28e-01 | 84.3% | 82.1% |
| 2rp5A00 | 1.10.150.830 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.64 | 44.0 | 4.29e-01 | 72.2% | 64.1% |
| 6z4xA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 45.0 | 3.93e-01 | 72.2% | 67.7% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 47.0 | 4.42e-01 | 78.7% | 73.5% |
| 3aq5A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.61 | 46.0 | 4.50e-01 | 79.6% | 76.1% |
| 2gkmA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 46.0 | 4.35e-01 | 81.5% | 84.3% |
| 2prrA02 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.59 | 43.0 | 4.10e-01 | 75.0% | 78.7% |
| 1u00A02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.59 | 42.0 | 4.42e-01 | 73.1% | 82.3% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 40.0 | 4.45e-01 | 72.2% | 100.0% |
| 3l1nA02 | 1.20.1280.140 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.57 | 34.0 | 3.73e-01 | 91.7% | 72.4% |
| 1dkxA02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.57 | 40.0 | 4.64e-01 | 75.0% | 100.0% |
| 2icwG01 | 1.20.120.390 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1 | 0.57 | 39.0 | 3.72e-01 | 70.4% | 68.5% |
| 4dxwA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 48.0 | 4.78e-01 | 96.3% | 98.2% |
| 1dlwA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 44.0 | 4.33e-01 | 84.3% | 81.9% |
| 1r4wA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 39.0 | 3.17e-01 | 72.2% | 60.6% |
| 6bmeA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 43.0 | 4.17e-01 | 85.2% | 75.6% |
| 5eroA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.55 | 43.0 | 3.26e-01 | 87.0% | 78.4% |
| 2q7rB00 | 1.20.120.550 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain | 0.55 | 39.0 | 3.51e-01 | 73.1% | 56.5% |
| 1nu7D02 | 1.20.120.760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Staphylcoagulase, helix bundle, domain 2 | 0.55 | 42.0 | 3.98e-01 | 81.5% | 70.3% |
| 3lvyE01 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.54 | 40.0 | 3.54e-01 | 78.7% | 60.6% |
| 2ot4A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 38.0 | 3.87e-01 | 72.2% | 88.8% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.53 | 38.0 | 4.16e-01 | 74.1% | 98.8% |
| 7dkaA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 36.0 | 3.08e-01 | 73.1% | 39.5% |
| 1qdbA02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 43.0 | 3.90e-01 | 87.0% | 74.1% |
| 3rkgA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.53 | 39.0 | 3.41e-01 | 77.8% | 92.1% |
| 1zylA03 | 1.20.1270.170 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.52 | 31.0 | 3.16e-01 | 83.3% | 58.3% |
| 1q6aA00 | 1.10.1240.30 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain | 0.52 | 44.0 | 4.46e-01 | 93.5% | 95.3% |
| 3o7pA01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.52 | 41.0 | 3.31e-01 | 85.2% | 86.7% |
| 2qsbA00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.51 | 35.0 | 3.86e-01 | 72.2% | 89.4% |
| 3hwrA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.51 | 35.0 | 3.36e-01 | 72.2% | 93.0% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3939120 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.74 | 64.0 | 5.54e-01 | 91.7% | 88.1% |
| 3611532 | 4198.1.1.0 ↗ | alpha arrays › TerB-like › TerB-like › TerB-like | 0.69 | 50.0 | 4.22e-01 | 75.9% | 97.2% |
| 5078867 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.66 | 39.0 | 4.29e-01 | 87.0% | 70.0% |
| 3578718 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.65 | 53.0 | 5.59e-01 | 90.7% | 100.0% |
| 3345767 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.62 | 47.0 | 4.50e-01 | 81.5% | 68.8% |
| 3983938 | 608.1.1.0 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like | 0.62 | 48.0 | 4.12e-01 | 81.5% | 55.3% |
| 3794915 | 3065.1.1.1 ↗ | alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › ANIS5_cation-bd | 0.62 | 49.0 | 4.55e-01 | 86.1% | 67.4% |
| 3378097 | 604.1.1.110 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › WIT1_2_N | 0.62 | 40.0 | 3.86e-01 | 93.5% | 58.3% |
| 3236141 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.61 | 45.0 | 4.26e-01 | 79.6% | 77.0% |
| 3577067 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.60 | 43.0 | 4.08e-01 | 74.1% | 76.2% |
| 3692484 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.59 | 45.0 | 3.61e-01 | 79.6% | 89.5% |
| 5034299 | 7014.1.1.0 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain | 0.59 | 41.0 | 3.77e-01 | 70.4% | 95.0% |
| 4600893 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.59 | 43.0 | 3.23e-01 | 75.0% | 61.9% |
| 3579262 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.58 | 40.0 | 3.40e-01 | 93.5% | 42.9% |
| 4100812 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 46.0 | 3.83e-01 | 84.3% | 55.1% |
| 4203130 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.56 | 40.0 | 3.94e-01 | 84.3% | 69.6% |
| 3544351 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 45.0 | 3.03e-01 | 91.7% | 38.8% |
| 5055701 | 1076.1.1.1 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like | 0.53 | 39.0 | 3.28e-01 | 79.6% | 65.7% |
| 3763555 | 109.4.1.1505 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_FBXO47 | 0.53 | 44.0 | 3.56e-01 | 91.7% | 74.3% |
| 3419686 | 3755.4.1.46 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › NET2A | 0.52 | 45.0 | 3.79e-01 | 93.5% | 86.1% |
| 3377710 | 4323.1.1.8 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › NET2A | 0.52 | 43.0 | 3.83e-01 | 88.0% | 86.0% |
| 3290543 | 150.5.1.11 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › T7SS_ESX_EspC | 0.52 | 40.0 | 4.09e-01 | 89.8% | 82.4% |