←Back to structures

SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00140

Bact-Vir

SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00140

Identity

Kingdom:
phage

Quality

89.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-105
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 44.0 5.63e-01 75.8% 100.0%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 46.0 5.43e-01 96.7% 92.1%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 45.0 5.50e-01 83.5% 96.6%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 43.0 4.99e-01 92.3% 83.3%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 43.0 5.04e-01 81.3% 88.9%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 46.0 5.43e-01 85.7% 98.4%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 38.0 4.95e-01 73.6% 100.0%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 40.0 4.69e-01 98.9% 85.9%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.66 48.0 5.27e-01 97.8% 94.6%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 41.0 4.68e-01 92.3% 83.8%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 41.0 4.99e-01 91.2% 100.0%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 43.0 4.19e-01 94.5% 61.0%
2vc8A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 45.0 4.97e-01 84.6% 94.4%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.62 50.0 4.56e-01 89.0% 75.0%
4rljB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 43.0 3.61e-01 71.4% 95.9%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.60 41.0 4.12e-01 70.3% 98.9%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.59 40.0 3.76e-01 81.3% 58.7%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.71e-01 81.3% 95.0%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.58 48.0 3.85e-01 89.0% 99.4%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.23e-01 85.7% 80.7%
2x45A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 51.0 4.41e-01 100.0% 81.2%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 4.51e-01 91.2% 90.7%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.57 48.0 4.54e-01 91.2% 96.3%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.57 40.0 4.21e-01 91.2% 80.7%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.57 44.0 4.85e-01 98.9% 100.0%
2xrcC04 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 41.0 3.24e-01 76.9% 48.3%
3klxB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 40.0 3.16e-01 75.8% 65.2%
2flhB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 40.0 3.40e-01 76.9% 83.0%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 39.0 3.44e-01 76.9% 96.5%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.54 39.0 3.60e-01 76.9% 84.6%
5e4bA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 40.0 3.18e-01 76.9% 73.3%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 4.32e-01 91.2% 91.3%
1xb2B02 3.30.479.20 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Elongation factor Ts, dimerisation domain 0.53 40.0 3.64e-01 78.0% 100.0%
1z6bA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 37.0 3.25e-01 72.5% 97.2%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.53 46.0 4.04e-01 94.5% 97.7%
4mp8A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.53 40.0 3.37e-01 81.3% 58.4%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 48.0 4.44e-01 100.0% 97.4%
3rt0C00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 39.0 3.16e-01 76.9% 73.3%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 37.0 4.24e-01 84.6% 100.0%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.52 36.0 3.39e-01 74.7% 72.9%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 37.0 3.24e-01 78.0% 84.5%
3e8pA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 35.0 3.01e-01 72.5% 90.2%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3300074 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 46.0 5.85e-01 90.1% 100.0%
3922679 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.77 42.0 5.65e-01 76.9% 100.0%
3935469 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.75 53.0 5.95e-01 84.6% 94.3%
4075769 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.74 44.0 5.53e-01 82.4% 98.2%
3866038 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.74 44.0 4.57e-01 82.4% 63.5%
3819397 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.74 51.0 5.44e-01 83.5% 81.2%
2127246 4.8.1.4 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MBT 0.74 50.0 5.66e-01 97.8% 91.3%
3936430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 45.0 4.80e-01 87.9% 71.2%
3917568 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 46.0 4.27e-01 86.8% 52.2%
4984882 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.71 45.0 5.12e-01 92.3% 84.3%
4112177 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.71 46.0 5.35e-01 96.7% 92.3%
5042892 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.71 46.0 5.54e-01 84.6% 100.0%
3924213 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 45.0 4.50e-01 86.8% 62.1%
4059465 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.71 46.0 5.29e-01 97.8% 89.7%
1567496 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.71 44.0 5.35e-01 92.3% 100.0%
3414167 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 46.0 3.50e-01 87.9% 29.3%
151019 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.70 47.0 4.85e-01 94.5% 72.9%
1394554 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.70 46.0 5.37e-01 85.7% 95.3%
3901117 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.70 44.0 3.46e-01 100.0% 31.7%
3764432 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 43.0 5.00e-01 100.0% 87.7%
3300051 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.69 48.0 5.30e-01 89.0% 88.0%
3395150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 45.0 5.37e-01 94.5% 100.0%
3504417 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 45.0 4.56e-01 86.8% 67.8%
3335404 4.1.1.350 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7589 0.68 59.0 5.12e-01 93.4% 90.4%
3485965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 42.0 5.10e-01 94.5% 95.0%
4268386 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 46.0 5.17e-01 96.7% 91.4%
4015427 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 44.0 3.34e-01 86.8% 28.4%
3625263 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 50.0 4.87e-01 94.5% 72.0%
3492557 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.66 47.0 4.63e-01 87.9% 68.0%
3636503 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 48.0 5.45e-01 96.7% 100.0%
3886139 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 45.0 5.30e-01 96.7% 100.0%
4069543 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 47.0 5.15e-01 91.2% 93.3%
5066224 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.65 44.0 4.49e-01 96.7% 72.2%
3795301 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.64 43.0 4.62e-01 100.0% 80.0%
3848399 4.8.1.24 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.64 43.0 4.88e-01 90.1% 91.4%
3279470 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 43.0 4.40e-01 83.5% 72.2%
4207502 274.1.1.38 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › Pecanex_C 0.63 43.0 3.42e-01 71.4% 88.9%
3825252 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 50.0 5.06e-01 89.0% 85.6%
3389662 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.62 46.0 4.86e-01 85.7% 87.5%
3397845 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 50.0 4.77e-01 97.8% 74.3%
3684460 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.62 49.0 4.87e-01 83.5% 94.7%
1144780 219.1.1.69 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GtgE 0.62 50.0 4.56e-01 89.0% 75.0%
3867207 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.61 45.0 4.52e-01 95.6% 74.7%
3354076 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.61 52.0 4.61e-01 93.4% 95.4%
3588727 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 41.0 4.69e-01 82.4% 92.9%
3405627 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 44.0 4.41e-01 94.5% 75.8%
3796536 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.59 41.0 4.38e-01 72.5% 83.7%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 52.0 3.85e-01 96.7% 46.7%
1383134 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 48.0 4.60e-01 91.2% 89.6%
3257650 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 44.0 4.56e-01 90.1% 87.1%
3500684 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.57 41.0 4.32e-01 92.3% 85.0%
3586034 274.1.1.38 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › Pecanex_C 0.57 41.0 3.12e-01 75.8% 99.1%
4646862 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.56 46.0 4.28e-01 85.7% 94.5%
3394559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 51.0 4.83e-01 96.7% 88.6%
3887472 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 4.38e-01 91.2% 88.2%
4027263 4.1.1.104 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.56 49.0 4.47e-01 96.7% 93.3%
3627688 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.56 47.0 4.01e-01 94.5% 80.7%
3486144 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 40.0 2.74e-01 75.8% 43.2%
4493566 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.52 47.0 4.34e-01 97.8% 93.0%
4137973 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.52 48.0 4.48e-01 100.0% 99.1%
3553166 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.52 46.0 4.10e-01 95.6% 80.8%
4521227 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.52 46.0 4.30e-01 97.8% 94.8%
4032514 1.1.5.16 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.52 46.0 3.49e-01 96.7% 61.5%
1282236 1.1.5.16 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.52 46.0 3.73e-01 97.8% 73.5%
4279225 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.52 47.0 4.28e-01 100.0% 90.8%
3590667 1.1.5.16 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.52 46.0 3.43e-01 97.8% 72.3%
3710595 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 45.0 4.22e-01 93.4% 99.1%
4409502 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.51 47.0 4.44e-01 100.0% 99.1%
3399086 60.1.1.2 ↗ beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › Med25 0.51 35.0 3.06e-01 72.5% 65.3%
5081683 2002.3.1.3 ↗ a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Glyco_hydro_57 0.51 43.0 2.72e-01 89.0% 39.3%
4118973 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.51 47.0 4.24e-01 100.0% 90.8%
4147685 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.51 47.0 4.38e-01 100.0% 98.2%
4156970 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.51 46.0 4.15e-01 97.8% 90.8%
4278559 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.51 46.0 4.36e-01 100.0% 99.1%
3593948 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 41.0 4.26e-01 90.1% 100.0%
3578619 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.50 44.0 4.19e-01 94.5% 91.4%
3593222 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 41.0 4.35e-01 93.4% 100.0%
3580039 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.50 43.0 3.57e-01 93.4% 63.7%