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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00153
Bact-VirSR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00153
Identity
- Kingdom:
- phage
Quality
86.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-98
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6hhuA01 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.68 | 46.0 | 4.99e-01 | 96.9% | 85.9% |
| 4mboA01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 45.0 | 3.88e-01 | 95.8% | 45.7% |
| 4wz9A01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.64 | 44.0 | 3.41e-01 | 100.0% | 31.8% |
| 4kx7A01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.62 | 41.0 | 3.20e-01 | 99.0% | 30.1% |
| 1sq2N00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 45.0 | 4.28e-01 | 97.9% | 66.1% |
| 4gucA00 | 2.60.40.3720 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 42.0 | 4.01e-01 | 93.8% | 60.9% |
| 4f3lA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.60 | 43.0 | 3.99e-01 | 75.0% | 100.0% |
| 1wosA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.58 | 39.0 | 4.11e-01 | 91.7% | 77.9% |
| 3eb7A03 | 2.100.10.10 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain | 0.56 | 40.0 | 3.21e-01 | 74.0% | 99.5% |
| 3l4gB03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.55 | 40.0 | 4.38e-01 | 100.0% | 98.6% |
| 3oc5A02 | 2.60.40.3240 | Mainly Beta › Sandwich › Immunoglobulin-like › Vibrio cholerae toxin co-regulated pilus biosynthesis protein F, C-terminal domain | 0.55 | 48.0 | 4.24e-01 | 97.9% | 68.8% |
| 5nfiB02 | 2.60.40.2090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 40.0 | 3.65e-01 | 100.0% | 57.9% |
| 8gf5C01 | 3.30.70.470 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 47.0 | 4.16e-01 | 100.0% | 73.9% |
| 4ob9A00 | 3.60.150.10 | Alpha Beta › 4-Layer Sandwich › Chorismate synthase, AroC fold › Chorismate synthase AroC | 0.53 | 47.0 | 3.32e-01 | 100.0% | 39.3% |
| 3bnwB00 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.53 | 46.0 | 3.97e-01 | 100.0% | 87.9% |
| 5ek8A01 | 2.60.40.3330 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 47.0 | 4.32e-01 | 100.0% | 88.9% |
| 4fx9A03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.52 | 47.0 | 4.46e-01 | 99.0% | 96.5% |
| 7tm7B01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.52 | 43.0 | 2.85e-01 | 93.8% | 51.3% |
| 5troA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 36.0 | 2.60e-01 | 74.0% | 87.3% |
| 5h9fJ00 | 3.30.70.2660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 44.0 | 3.45e-01 | 97.9% | 89.5% |
| 2jmuA01 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.51 | 44.0 | 3.44e-01 | 95.8% | 83.6% |
| 2oztA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 35.0 | 3.34e-01 | 71.9% | 99.2% |
| 2k5gA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 42.0 | 3.45e-01 | 90.6% | 78.3% |
| 2pgwA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.50 | 36.0 | 3.18e-01 | 75.0% | 79.3% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3395651 | 223.2.1.32 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 | 0.66 | 46.0 | 3.85e-01 | 71.9% | 56.2% |
| 3416094 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.64 | 46.0 | 3.56e-01 | 100.0% | 32.7% |
| 4255610 | 11.1.1.154 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgE_dom_N_S | 0.64 | 49.0 | 3.82e-01 | 100.0% | 37.1% |
| 4003057 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 49.0 | 4.73e-01 | 96.9% | 72.2% |
| 3469605 | 10.10.1.1 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT | 0.63 | 50.0 | 4.61e-01 | 100.0% | 65.4% |
| 3882479 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 44.0 | 3.98e-01 | 96.9% | 56.3% |
| 3810482 | 1.1.7.46 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B | 0.59 | 46.0 | 4.11e-01 | 94.8% | 59.3% |
| 4968348 | 231.1.4.0 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Apc (acetophenone carboxylase) beta subunit middle domain | 0.58 | 46.0 | 3.97e-01 | 86.5% | 87.1% |
| 417536 | 11.1.1.87 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TcpF | 0.57 | 50.0 | 4.55e-01 | 99.0% | 74.6% |
| 3895056 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.57 | 42.0 | 3.98e-01 | 100.0% | 64.2% |
| 3993683 | 389.1.1.47 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › TIL_2 | 0.56 | 27.0 | 3.15e-01 | 75.0% | 61.4% |
| 3710311 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 49.0 | 4.48e-01 | 97.9% | 88.5% |
| 3202394 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 48.0 | 4.20e-01 | 97.9% | 79.3% |
| 5059327 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 44.0 | 4.22e-01 | 100.0% | 73.0% |
| 1790183 | 11.1.1.278 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IrmA | 0.55 | 47.0 | 4.37e-01 | 100.0% | 75.0% |
| 3982237 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.54 | 33.0 | 3.48e-01 | 72.9% | 68.2% |
| 3759236 | 223.1.1.77 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Intu_longin_3 | 0.53 | 37.0 | 3.17e-01 | 72.9% | 75.9% |
| 3214910 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.53 | 40.0 | 3.10e-01 | 82.3% | 77.0% |
| 3710460 | 1.1.7.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th | 0.53 | 46.0 | 4.45e-01 | 97.9% | 86.2% |
| 3720149 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.52 | 42.0 | 4.00e-01 | 91.7% | 75.8% |
| 4424672 | 323.1.1.7 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Transferase | 0.52 | 43.0 | 3.41e-01 | 92.7% | 67.6% |
| 3805726 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 45.0 | 4.19e-01 | 99.0% | 88.3% |
| 5021906 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 41.0 | 3.83e-01 | 96.9% | 68.8% |
| 3327975 | 3613.1.1.1 ↗ | beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Clp1 | 0.50 | 38.0 | 3.85e-01 | 79.2% | 98.9% |