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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00179
Bact-VirSR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00179
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-75
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1g6eA00 | 2.60.20.30 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › | 0.70 | 47.0 | 4.23e-01 | 77.8% | 50.6% |
| 1fi2A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 53.0 | 3.75e-01 | 100.0% | 29.4% |
| 1lr5B00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 53.0 | 4.02e-01 | 100.0% | 38.4% |
| 1ji0A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 48.0 | 3.36e-01 | 93.7% | 37.2% |
| 4fcaA01 | 2.60.120.1250 | Mainly Beta › Sandwich › Jelly Rolls › Peptidase M60, enhancin-like domain 1 | 0.58 | 50.0 | 4.28e-01 | 100.0% | 57.8% |
| 1n10A01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.57 | 39.0 | 3.25e-01 | 73.0% | 69.3% |
| 2nq2D00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 46.0 | 3.16e-01 | 93.7% | 62.1% |
| 2zxqA05 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 46.0 | 3.36e-01 | 98.4% | 43.4% |
| 1l4iB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 3.83e-01 | 79.4% | 76.0% |
| 1b1zA02 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.54 | 41.0 | 3.26e-01 | 84.1% | 75.7% |
| 1b35B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 44.0 | 3.08e-01 | 100.0% | 42.7% |
| 6xmpA01 | 2.70.150.10 | Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A | 0.53 | 44.0 | 3.63e-01 | 100.0% | 59.4% |
| 4idcA01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.53 | 38.0 | 2.72e-01 | 77.8% | 56.3% |
| 2hdeA01 | 3.10.20.550 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › ASAP complex, SAP18 subunit | 0.53 | 37.0 | 3.11e-01 | 76.2% | 82.9% |
| 1auvA01 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.53 | 37.0 | 3.76e-01 | 73.0% | 78.3% |
| 1kf6B01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.53 | 39.0 | 3.45e-01 | 82.5% | 76.0% |
| 4g1vA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 38.0 | 3.18e-01 | 77.8% | 75.4% |
| 1wzlA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 43.0 | 3.65e-01 | 100.0% | 79.3% |
| 3ihlB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 43.0 | 3.03e-01 | 100.0% | 68.1% |
| 5h66A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 42.0 | 3.12e-01 | 96.8% | 70.6% |
| 6lumB01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.51 | 37.0 | 3.24e-01 | 82.5% | 72.7% |
| 5c82A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 40.0 | 3.11e-01 | 95.2% | 48.2% |
| 2zewB00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 42.0 | 3.34e-01 | 98.4% | 53.7% |
| 1ib6A02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.50 | 39.0 | 2.96e-01 | 87.3% | 75.9% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5033780 | 11.1.4.138 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF4382 | 0.62 | 47.0 | 3.70e-01 | 85.7% | 80.7% |
| 3263518 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 41.0 | 3.56e-01 | 76.2% | 73.3% |
| 312608 | 2004.1.1.417 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 | 0.56 | 46.0 | 3.16e-01 | 93.7% | 62.1% |
| 3772228 | 1.1.2.40 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PEX6_vert_N | 0.56 | 39.0 | 3.11e-01 | 73.0% | 56.9% |
| 4964752 | 221.1.1.47 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Fer2_3 | 0.55 | 40.0 | 3.24e-01 | 81.0% | 59.3% |
| 5009745 | 302.4.1.1 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.54 | 39.0 | 3.26e-01 | 77.8% | 74.8% |
| 4330212 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.54 | 39.0 | 3.24e-01 | 77.8% | 79.1% |
| 4508744 | 239.1.1.5 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C | 0.53 | 41.0 | 3.62e-01 | 87.3% | 77.0% |
| 3403464 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.53 | 34.0 | 3.47e-01 | 96.8% | 68.3% |
| 3998626 | 109.4.1.194 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_10 | 0.53 | 38.0 | 2.25e-01 | 81.0% | 18.3% |
| 1402 | 11.1.1.46 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha-amylase_N | 0.52 | 44.0 | 3.68e-01 | 100.0% | 79.2% |
| 5006804 | 2007.1.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase | 0.52 | 40.0 | 2.89e-01 | 88.9% | 88.3% |
| 6101 | 221.1.1.15 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Staphylokinase | 0.51 | 37.0 | 3.13e-01 | 82.5% | 62.8% |
| 5007173 | 2004.1.1.293 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 | 0.51 | 40.0 | 2.83e-01 | 95.2% | 57.9% |