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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00192
Bact-VirSR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00192
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 22-120
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1d0qA00 | 3.90.580.10 | Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain | 0.75 | 61.0 | 6.10e-01 | 98.0% | 84.3% |
| 4tpsA00 | 3.30.310.250 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA | 0.61 | 41.0 | 3.69e-01 | 100.0% | 48.6% |
| 2hzmG01 | 3.30.310.180 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.60 | 44.0 | 4.22e-01 | 100.0% | 67.0% |
| 2nlvA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.54 | 43.0 | 4.16e-01 | 100.0% | 76.8% |
| 1k8iA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.53 | 31.0 | 3.44e-01 | 81.8% | 72.7% |
| 2k4jA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 34.0 | 3.40e-01 | 82.8% | 65.7% |
| 1dxkA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.50 | 39.0 | 3.10e-01 | 84.8% | 99.1% |
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.50 | 41.0 | 4.05e-01 | 88.9% | 90.5% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4680318 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.81 | 63.0 | 6.64e-01 | 96.0% | 90.0% |
| 4995759 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 60.0 | 6.64e-01 | 90.9% | 100.0% |
| 4539347 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.77 | 64.0 | 6.42e-01 | 99.0% | 88.0% |
| 8015 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.75 | 61.0 | 6.10e-01 | 98.0% | 84.3% |
| 4166935 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.74 | 58.0 | 5.86e-01 | 98.0% | 84.0% |
| 3942532 | 375.1.1.39 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Prim_Zn_Ribbon | 0.71 | 53.0 | 5.62e-01 | 94.9% | 90.6% |
| 3944184 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 63.0 | 6.20e-01 | 97.0% | 92.4% |
| 3943026 | 375.1.1.39 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Prim_Zn_Ribbon | 0.68 | 52.0 | 5.11e-01 | 92.9% | 74.3% |
| 5003468 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.67 | 55.0 | 5.48e-01 | 98.0% | 85.7% |
| 3590274 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 51.0 | 5.34e-01 | 91.9% | 91.1% |
| 4985176 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.62 | 43.0 | 4.15e-01 | 100.0% | 62.7% |
| 4985658 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.62 | 43.0 | 4.53e-01 | 93.9% | 82.4% |
| 4639076 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 44.0 | 4.55e-01 | 94.9% | 78.9% |
| 5019170 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.61 | 41.0 | 3.93e-01 | 92.9% | 59.1% |
| 3953024 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.60 | 42.0 | 4.02e-01 | 100.0% | 61.7% |
| 4931934 | 241.9.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like | 0.60 | 45.0 | 4.44e-01 | 79.8% | 95.2% |
| 4959522 | 241.9.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 | 0.59 | 44.0 | 4.16e-01 | 79.8% | 72.5% |
| 3839444 | 241.9.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655 | 0.57 | 42.0 | 4.02e-01 | 79.8% | 81.7% |
| 4979253 | 241.9.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 | 0.56 | 42.0 | 4.12e-01 | 79.8% | 80.0% |
| 3594393 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.56 | 43.0 | 4.68e-01 | 94.9% | 100.0% |
| 26896 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.53 | 34.0 | 3.60e-01 | 75.8% | 73.3% |
| 3789912 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.53 | 33.0 | 3.52e-01 | 73.7% | 71.8% |
| 4066235 | 2492.1.1.6 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › A_deamin | 0.52 | 46.0 | 3.17e-01 | 100.0% | 84.8% |
| 3534814 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.51 | 34.0 | 3.81e-01 | 96.0% | 95.7% |
D2
medium
residues 220-368
Domain cluster:
rep: IMGVR_UViG_3300042256_000037-3300042256-Ga0451646_00357_7329_9968__D263-392
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13155.13 best | Toprim_2 | 29.2 | 1.40e-06 | 63.8% | 88.6% |
CATH (63)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5gujA02 | 3.40.1360.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › | 0.84 | 68.0 | 7.44e-01 | 88.6% | 100.0% |
| 2au3A03 | 3.40.1360.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › | 0.80 | 64.0 | 7.03e-01 | 88.6% | 100.0% |
| 1q57G02 | 3.40.1360.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › | 0.79 | 65.0 | 6.99e-01 | 90.6% | 100.0% |
| 6tg6A01 | 3.40.1360.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › | 0.77 | 53.0 | 6.25e-01 | 75.8% | 100.0% |
| 3k6kA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.67 | 56.0 | 4.42e-01 | 88.6% | 82.2% |
| 1oi2A01 | 3.40.50.10440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 | 0.66 | 55.0 | 5.21e-01 | 87.9% | 86.7% |
| 2iu4A01 | 3.40.50.10440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 | 0.65 | 54.0 | 5.18e-01 | 87.9% | 97.1% |
| 2xadA00 | 3.40.50.10320 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like | 0.64 | 52.0 | 4.27e-01 | 85.2% | 100.0% |
| 1td2A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.64 | 48.0 | 3.85e-01 | 78.5% | 80.5% |
| 3fxaA00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.63 | 47.0 | 4.34e-01 | 77.9% | 67.0% |
| 2f48A01 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 53.0 | 4.25e-01 | 91.9% | 74.4% |
| 7zllA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.62 | 40.0 | 3.27e-01 | 77.9% | 34.7% |
| 4mzyA02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 40.0 | 3.87e-01 | 94.0% | 57.7% |
| 1lhpA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.60 | 45.0 | 3.56e-01 | 77.9% | 77.1% |
| 3fnrA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.59 | 45.0 | 3.58e-01 | 79.2% | 94.4% |
| 3tixB02 | 3.40.1010.30 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › | 0.59 | 37.0 | 4.03e-01 | 81.9% | 75.0% |
| 3mbhA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.59 | 44.0 | 3.58e-01 | 79.2% | 78.5% |
| 3qyfA01 | 3.40.50.10770 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein VC1899 like domain (Restriction endonuclease-like) | 0.58 | 40.0 | 3.90e-01 | 78.5% | 63.0% |
| 1aoxA00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.58 | 44.0 | 4.06e-01 | 81.2% | 98.0% |
| 3q41A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 47.0 | 4.30e-01 | 85.2% | 97.9% |
| 3pnnA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.58 | 41.0 | 3.28e-01 | 78.5% | 36.5% |
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.58 | 33.0 | 4.11e-01 | 79.2% | 93.3% |
| 2eo0B00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.57 | 37.0 | 4.04e-01 | 83.2% | 77.4% |
| 7xg9A01 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.57 | 46.0 | 3.68e-01 | 83.9% | 70.8% |
| 5jnmA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 46.0 | 4.13e-01 | 84.6% | 91.6% |
| 1obbA00 | 3.90.1820.10 | Alpha Beta › Alpha-Beta Complex › LDH C-terminal domain-like › AglA-like glucosidase | 0.57 | 50.0 | 3.55e-01 | 97.3% | 87.9% |
| 3ogzA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.57 | 44.0 | 3.11e-01 | 81.2% | 28.4% |
| 4f1jA00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.56 | 43.0 | 3.97e-01 | 81.2% | 97.0% |
| 3ddmA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.56 | 41.0 | 3.49e-01 | 98.7% | 46.6% |
| 2csuA03 | 3.40.50.261 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains | 0.56 | 42.0 | 4.10e-01 | 79.2% | 89.8% |
| 1jeyA01 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.56 | 42.0 | 3.75e-01 | 78.5% | 99.5% |
| 1ks9A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 43.0 | 4.21e-01 | 81.9% | 87.4% |
| 2jepB00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 42.0 | 3.13e-01 | 78.5% | 76.8% |
| 1qyrA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 43.0 | 4.01e-01 | 83.2% | 88.6% |
| 1tigA00 | 3.30.110.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain | 0.54 | 31.0 | 3.83e-01 | 80.5% | 93.2% |
| 4dcmA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 38.0 | 3.60e-01 | 83.2% | 60.9% |
| 1ou0A00 | 3.40.50.10230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin biosynthesis CobH/CbiC, precorrin-8X methylmutase | 0.54 | 41.0 | 3.77e-01 | 78.5% | 72.1% |
| 4narA01 | 3.40.50.11440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain | 0.54 | 42.0 | 3.57e-01 | 83.2% | 79.7% |
| 3htxD03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 45.0 | 3.98e-01 | 90.6% | 95.9% |
| 3ieiA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 42.0 | 3.33e-01 | 82.6% | 77.1% |
| 4h0oA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 39.0 | 3.51e-01 | 73.8% | 96.6% |
| 2oodA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.53 | 44.0 | 3.45e-01 | 88.6% | 85.8% |
| 4kruA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 44.0 | 3.95e-01 | 88.6% | 74.8% |
| 3jy6D02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 38.0 | 3.96e-01 | 85.9% | 80.0% |
| 8hi4A03 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 43.0 | 3.85e-01 | 85.2% | 92.2% |
| 4zpjA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 43.0 | 4.11e-01 | 85.9% | 80.1% |
| 1cecA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 43.0 | 3.34e-01 | 87.2% | 75.2% |
| 6bs3B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 40.0 | 3.14e-01 | 79.2% | 96.5% |
| 2i9uA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.53 | 43.0 | 3.38e-01 | 86.6% | 59.4% |
| 1u8xX01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 39.0 | 3.80e-01 | 77.2% | 81.9% |
| 1dpgA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 43.0 | 4.09e-01 | 86.6% | 94.9% |
| 2w7tA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.52 | 41.0 | 3.44e-01 | 92.6% | 47.3% |
| 4evsA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 42.0 | 4.08e-01 | 85.9% | 78.9% |
| 2c1lA01 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.52 | 47.0 | 4.36e-01 | 100.0% | 91.0% |
| 1aa1B02 | 3.20.20.110 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain | 0.52 | 42.0 | 3.35e-01 | 87.2% | 62.0% |
| 5uidA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.52 | 40.0 | 3.44e-01 | 82.6% | 52.0% |
| 1y7oB00 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.51 | 38.0 | 3.61e-01 | 97.3% | 64.0% |
| 2ewfA03 | 3.40.91.50 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.51 | 45.0 | 3.95e-01 | 97.3% | 78.7% |
| 4g9pA01 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.51 | 41.0 | 3.36e-01 | 86.6% | 66.9% |
| 3u7eB02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 41.0 | 3.83e-01 | 85.9% | 72.8% |
| 5okaA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 45.0 | 3.14e-01 | 95.3% | 51.1% |
| 3cuxA01 | 3.20.20.360 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Malate synthase, domain 3 | 0.50 | 46.0 | 3.41e-01 | 99.3% | 90.3% |
| 2v4uA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.50 | 41.0 | 3.41e-01 | 92.6% | 49.1% |
ECOD (73)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4437562 | 2006.1.3.6 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 | 0.87 | 71.0 | 7.73e-01 | 88.6% | 99.2% |
| 4426393 | 2006.1.3.6 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 | 0.85 | 70.0 | 7.51e-01 | 89.3% | 97.7% |
| 4429071 | 2006.1.3.6 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 | 0.85 | 69.0 | 7.26e-01 | 89.3% | 92.6% |
| 4041525 | 2006.1.3.6 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 | 0.85 | 66.0 | 7.36e-01 | 84.6% | 100.0% |
| 4995761 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.84 | 60.0 | 6.97e-01 | 87.2% | 99.1% |
| 4507511 | 2006.1.3.6 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 | 0.83 | 73.0 | 6.61e-01 | 97.3% | 72.1% |
| 4441825 | 2006.1.3.6 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 | 0.81 | 65.0 | 7.05e-01 | 87.2% | 98.4% |
| 3949087 | 2006.1.3.6 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 | 0.81 | 75.0 | 7.44e-01 | 96.6% | 96.1% |
| 4997558 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.75 | 52.0 | 5.64e-01 | 71.8% | 83.2% |
| 5031643 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.75 | 52.0 | 5.71e-01 | 71.1% | 86.4% |
| 4967569 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.74 | 52.0 | 5.72e-01 | 73.8% | 85.6% |
| 4236821 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.74 | 50.0 | 5.50e-01 | 71.8% | 82.4% |
| 4249160 | 2006.1.3.6 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 | 0.74 | 61.0 | 6.52e-01 | 88.6% | 99.2% |
| 4622340 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.74 | 52.0 | 5.58e-01 | 82.6% | 83.1% |
| 5063199 | 7592.1.1.6 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csa3_N | 0.74 | 41.0 | 4.35e-01 | 78.5% | 60.0% |
| 4481710 | 7579.1.1.5 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 | 0.72 | 61.0 | 4.32e-01 | 88.6% | 91.0% |
| 4970599 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.72 | 52.0 | 5.43e-01 | 74.5% | 82.1% |
| 5027051 | 2006.1.3.6 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 | 0.71 | 51.0 | 5.41e-01 | 73.8% | 86.7% |
| 4503155 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.71 | 50.0 | 5.33e-01 | 71.8% | 81.5% |
| 5075888 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.70 | 51.0 | 5.40e-01 | 76.5% | 85.4% |
| 3426392 | 2004.1.1.437 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA, AAA_31 | 0.68 | 53.0 | 4.36e-01 | 80.5% | 92.7% |
| 4342641 | 2004.1.1.175 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA | 0.67 | 51.0 | 4.14e-01 | 79.2% | 89.8% |
| 3265152 | 2010.1.1.2 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › Dak1 | 0.67 | 55.0 | 4.98e-01 | 87.2% | 95.0% |
| 3908657 | 2010.1.1.2 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › Dak1 | 0.66 | 55.0 | 4.90e-01 | 87.9% | 80.5% |
| 3386969 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.66 | 53.0 | 4.61e-01 | 83.9% | 97.3% |
| 4021758 | 2010.1.1.0 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain | 0.66 | 55.0 | 5.08e-01 | 87.9% | 81.1% |
| 1937172 | 2010.1.1.2 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › Dak1 | 0.66 | 54.0 | 5.10e-01 | 87.9% | 93.3% |
| 4196873 | 2010.1.1.2 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › Dak1 | 0.65 | 54.0 | 5.14e-01 | 87.9% | 94.9% |
| 4968859 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.64 | 39.0 | 4.21e-01 | 79.2% | 70.4% |
| 4984746 | 7592.1.1.0 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains | 0.63 | 49.0 | 4.28e-01 | 80.5% | 68.3% |
| 4591481 | 2004.1.1.419 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Fer4_NifH, AAA_31 | 0.63 | 53.0 | 4.42e-01 | 90.6% | 100.0% |
| 4647059 | 2003.1.1.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › G6PD_N | 0.62 | 48.0 | 4.31e-01 | 79.9% | 97.0% |
| 3968135 | 2003.1.1.141 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Polysacc_synt_2, GDP_Man_Dehyd | 0.62 | 53.0 | 3.92e-01 | 92.6% | 84.9% |
| 4952580 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.60 | 45.0 | 3.88e-01 | 78.5% | 87.5% |
| 5062114 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 47.0 | 5.05e-01 | 90.6% | 96.8% |
| 3248460 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.60 | 43.0 | 3.18e-01 | 94.0% | 28.8% |
| 4973404 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.60 | 38.0 | 2.99e-01 | 78.5% | 30.5% |
| None | — | 0.59 | 45.0 | 3.55e-01 | 79.9% | 76.3% | |
| None | — | 0.58 | 41.0 | 3.62e-01 | 71.8% | 82.7% | |
| 4270708 | 2006.1.3.7 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4 | 0.57 | 49.0 | 5.15e-01 | 91.9% | 98.5% |
| 3172841 | 2003.1.9.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins | 0.57 | 44.0 | 3.13e-01 | 81.9% | 92.8% |
| 4098108 | 2005.1.1.27 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC | 0.57 | 41.0 | 3.61e-01 | 75.2% | 82.2% |
| 1556228 | 2007.1.2.13 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 | 0.57 | 41.0 | 4.26e-01 | 84.6% | 79.7% |
| 3924887 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.57 | 43.0 | 3.95e-01 | 80.5% | 93.0% |
| 3801885 | 2007.1.3.28 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Glyco_transf_61 | 0.57 | 44.0 | 4.12e-01 | 81.2% | 79.4% |
| 4999937 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 44.0 | 4.78e-01 | 82.6% | 100.0% |
| 3492134 | 2003.1.9.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF, E1_4HB | 0.56 | 46.0 | 3.57e-01 | 86.6% | 88.9% |
| 3535081 | 7585.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 | 0.56 | 39.0 | 4.00e-01 | 85.9% | 74.3% |
| 3249866 | 7585.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 | 0.56 | 39.0 | 4.02e-01 | 70.5% | 80.0% |
| 4977989 | 2007.1.11.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › L-fucose isomerase, N-terminal and second domains | 0.55 | 43.0 | 4.47e-01 | 85.2% | 89.6% |
| 5048302 | 2007.1.11.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › L-fucose isomerase, N-terminal and second domains | 0.55 | 42.0 | 4.39e-01 | 85.2% | 88.1% |
| 4179980 | 2003.1.5.182 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD, Methyltransf_11 | 0.55 | 43.0 | 3.97e-01 | 83.9% | 85.6% |
| 3683578 | 7512.1.1.88 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_61 | 0.55 | 45.0 | 3.78e-01 | 88.6% | 98.0% |
| 3459659 | 2007.1.3.28 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Glyco_transf_61 | 0.54 | 45.0 | 3.62e-01 | 88.6% | 94.5% |
| 3229076 | 2003.1.1.17 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_Gly3P_dh_N | 0.54 | 43.0 | 3.83e-01 | 83.9% | 94.8% |
| 1189180 | 2484.1.1.12 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase | 0.54 | 39.0 | 3.53e-01 | 73.8% | 97.5% |
| 4992604 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.53 | 44.0 | 4.29e-01 | 85.9% | 91.3% |
| 4028855 | 7575.1.1.3 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C13 | 0.53 | 45.0 | 3.55e-01 | 91.9% | 56.6% |
| 158594 | 2007.1.1.43 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase, Peptidase_C26 | 0.53 | 41.0 | 3.41e-01 | 92.6% | 46.4% |
| 320080 | 2004.1.1.140 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Zeta_toxin | 0.53 | 45.0 | 3.90e-01 | 94.0% | 82.6% |
| 5058036 | 2002.1.1.172 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP_C | 0.52 | 40.0 | 3.67e-01 | 79.9% | 93.3% |
| 4944575 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.52 | 45.0 | 3.56e-01 | 97.3% | 65.2% |
| 5020840 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.52 | 41.0 | 3.21e-01 | 85.2% | 63.9% |
| 3403478 | 2007.15.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › Nuc_deoxyri_tr2 | 0.51 | 40.0 | 4.04e-01 | 80.5% | 95.2% |
| 4932259 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.51 | 42.0 | 3.33e-01 | 88.6% | 76.8% |
| 3968744 | 2007.13.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Rossmann-like domains in magnesium chelatase catalytic subunit › Rossmann-like domains in magnesium chelatase catalytic subunit | 0.51 | 38.0 | 4.11e-01 | 78.5% | 90.8% |
| 4121071 | 2484.1.1.55 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom | 0.51 | 40.0 | 3.78e-01 | 85.9% | 69.1% |
| 3594529 | 2007.1.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like | 0.51 | 39.0 | 3.19e-01 | 81.2% | 85.5% |
| 5050557 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.51 | 41.0 | 3.43e-01 | 86.6% | 90.2% |
| 2488795 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.50 | 37.0 | 3.08e-01 | 77.2% | 74.3% |
| 5011835 | 2002.1.1.446 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF3463 | 0.50 | 41.0 | 3.22e-01 | 87.2% | 83.4% |
| 4964067 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.50 | 45.0 | 4.22e-01 | 99.3% | 83.8% |
| 4946624 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.50 | 42.0 | 3.59e-01 | 89.9% | 91.7% |