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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00198
Bact-VirSR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00198
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-37_52-162
Domain cluster:
rep: OR475272.1__WNM67070.1__SEA_SCHOMBER_49__00049__D1-43_60-156
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4azsA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.68 | 38.0 | 4.84e-01 | 96.5% | 95.1% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.68 | 40.0 | 4.74e-01 | 95.8% | 84.8% |
| 4bfiB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 29.0 | 3.66e-01 | 83.9% | 64.4% |
| 3tvjB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.66 | 40.0 | 4.51e-01 | 96.5% | 78.5% |
| 2y3uA02 | 3.30.980.50 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.60 | 39.0 | 4.32e-01 | 94.4% | 83.2% |
| 4pxeA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 34.0 | 3.73e-01 | 86.7% | 70.9% |
| 4pxdA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 34.0 | 3.78e-01 | 86.7% | 73.9% |
| 3in6A02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 41.0 | 4.50e-01 | 96.5% | 91.5% |
| 5v7qT00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.56 | 33.0 | 3.86e-01 | 89.5% | 83.7% |
| 2xzmJ00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.56 | 33.0 | 3.81e-01 | 71.3% | 80.0% |
| 2k4qA00 | 4.10.410.40 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › | 0.55 | 49.0 | 4.74e-01 | 99.3% | 87.2% |
| 1ywxA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 30.0 | 3.53e-01 | 86.0% | 78.3% |
| 1nbwA02 | 3.90.470.30 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Coenzyme B12-Dependent Enzyme linker domain | 0.54 | 38.0 | 3.85e-01 | 72.7% | 95.1% |
| 2hq9B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 41.0 | 4.22e-01 | 96.5% | 83.2% |
| 2v8hA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 33.0 | 3.60e-01 | 86.7% | 74.1% |
| 1g84A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 27.0 | 3.12e-01 | 85.3% | 66.7% |
| 2okqB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 30.0 | 3.34e-01 | 76.2% | 69.5% |
| 4afhE00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.51 | 36.0 | 3.12e-01 | 86.7% | 47.6% |
| 1jeyA02 | 2.40.290.10 | Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › | 0.51 | 39.0 | 4.17e-01 | 96.5% | 92.9% |
| 2pimA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 35.0 | 3.61e-01 | 99.3% | 74.2% |
| 4ybvA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 33.0 | 3.53e-01 | 96.5% | 75.2% |
| 2pokA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 35.0 | 3.34e-01 | 71.3% | 79.4% |
| 4hvzA02 | 3.30.70.2970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 | 0.50 | 30.0 | 3.36e-01 | 87.4% | 75.0% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3580020 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.78 | 73.0 | 6.51e-01 | 100.0% | 98.5% |
| 3970827 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.71 | 43.0 | 5.39e-01 | 95.8% | 100.0% |
| 3369744 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.69 | 34.0 | 3.84e-01 | 84.6% | 59.1% |
| None | — | 0.66 | 41.0 | 4.77e-01 | 94.4% | 88.0% | |
| 4995820 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.65 | 53.0 | 5.57e-01 | 99.3% | 96.2% |
| 3821846 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.63 | 35.0 | 3.96e-01 | 80.4% | 70.0% |
| 3179676 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.62 | 39.0 | 2.97e-01 | 96.5% | 26.5% |
| 3581358 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.61 | 55.0 | 5.33e-01 | 97.2% | 87.7% |
| 5010122 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 36.0 | 4.21e-01 | 96.5% | 84.0% |
| 5049720 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.58 | 42.0 | 4.43e-01 | 99.3% | 83.1% |
| 4027407 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.57 | 37.0 | 2.63e-01 | 95.8% | 21.4% |
| 5044755 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.56 | 37.0 | 3.98e-01 | 89.5% | 76.8% |
| 4573225 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.56 | 33.0 | 3.73e-01 | 74.1% | 75.5% |
| 4544759 | 1.1.5.57 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 | 0.53 | 48.0 | 3.58e-01 | 99.3% | 42.5% |
| 4455016 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.53 | 34.0 | 3.80e-01 | 73.4% | 82.7% |
| 4339783 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.53 | 32.0 | 3.63e-01 | 73.4% | 78.2% |
| 3585717 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.52 | 30.0 | 3.08e-01 | 79.0% | 57.9% |
| 4311222 | 7523.1.1.5 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PDT | 0.52 | 36.0 | 3.19e-01 | 81.8% | 49.8% |