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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00199
Bact-VirSR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00199
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 38-102
Domain cluster:
rep: term2_saliva_scaffold_1_prodigal-single.1__X__X__00126__D50-128
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4b8vA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.85 | 66.0 | 6.61e-01 | 98.5% | 80.6% |
| 4b8vA02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.79 | 61.0 | 5.84e-01 | 90.8% | 72.6% |
| 6dx5A00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.66 | 47.0 | 3.44e-01 | 75.4% | 65.7% |
| 4iiwA01 | 3.30.1490.480 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Endolytic murein transglycosylase | 0.57 | 44.0 | 4.27e-01 | 95.4% | 75.0% |
| 4fdyA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.55 | 40.0 | 3.07e-01 | 80.0% | 47.8% |
| 1j5yA02 | 3.30.1340.20 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain | 0.54 | 43.0 | 3.77e-01 | 90.8% | 79.4% |
| 2ymmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 38.0 | 3.69e-01 | 73.8% | 78.1% |
| 5hzlB01 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.54 | 41.0 | 3.07e-01 | 86.2% | 40.5% |
| 4qclA05 | 1.10.132.60 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain | 0.53 | 46.0 | 3.45e-01 | 100.0% | 44.6% |
| 3qxyA02 | 3.90.1420.10 | Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain | 0.51 | 38.0 | 2.96e-01 | 84.6% | 43.7% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5004560 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 71.0 | 7.71e-01 | 93.8% | 100.0% |
| 4995817 | 101.15.1.4 ↗ | alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 | 0.88 | 82.0 | 8.01e-01 | 100.0% | 92.9% |
| 4177991 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.88 | 70.0 | 7.60e-01 | 95.4% | 100.0% |
| 3955076 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.88 | 59.0 | 6.88e-01 | 73.8% | 100.0% |
| 3587382 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.87 | 69.0 | 7.46e-01 | 93.8% | 100.0% |
| 3979943 | 101.15.1.3 ↗ | alpha arrays › HTH › LysM domain › LysM domain › Phage_tail_X | 0.85 | 63.0 | 7.06e-01 | 80.0% | 100.0% |
| 2809236 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.81 | 70.0 | 7.17e-01 | 95.4% | 96.8% |
| 3166029 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.81 | 61.0 | 6.55e-01 | 86.2% | 96.4% |
| 2968802 | 101.15.1.11 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_NFP | 0.80 | 63.0 | 4.89e-01 | 90.8% | 39.9% |
| 2895417 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.79 | 63.0 | 5.96e-01 | 90.8% | 72.7% |
| 3654876 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.77 | 64.0 | 4.95e-01 | 89.2% | 50.4% |
| 3970261 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.76 | 58.0 | 6.31e-01 | 84.6% | 98.1% |
| 3821115 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.76 | 64.0 | 5.79e-01 | 90.8% | 76.5% |
| 3381619 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.76 | 67.0 | 4.28e-01 | 96.9% | 61.1% |
| 3365578 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.75 | 64.0 | 5.95e-01 | 92.3% | 86.3% |
| 3656643 | 101.15.1.9 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_CERK1_LYK3_4_5 | 0.74 | 65.0 | 5.06e-01 | 95.4% | 51.9% |
| 3422876 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.72 | 58.0 | 6.02e-01 | 93.8% | 95.0% |
| 3353525 | 101.15.1.6 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 | 0.71 | 60.0 | 4.84e-01 | 93.8% | 56.0% |
| 3716764 | 101.15.1.12 ↗ | alpha arrays › HTH › LysM domain › LysM domain › PF30403 | 0.71 | 56.0 | 5.79e-01 | 86.2% | 93.3% |
| 4008890 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.70 | 54.0 | 5.71e-01 | 86.2% | 98.2% |
| 3647286 | 101.15.1.7 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM_RLK | 0.69 | 58.0 | 5.57e-01 | 93.8% | 97.3% |
| 3654744 | 101.15.1.10 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP | 0.67 | 57.0 | 5.23e-01 | 93.8% | 78.8% |
| 3278866 | 221.1.2.17 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › DUF1062 | 0.62 | 46.0 | 4.80e-01 | 83.1% | 100.0% |
| 3386481 | 3953.1.1.0 ↗ | a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain | 0.60 | 51.0 | 4.51e-01 | 98.5% | 64.0% |
| 3501453 | 4076.3.1.6 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › GINS_N | 0.60 | 38.0 | 3.84e-01 | 89.2% | 63.1% |
| 3738468 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.56 | 46.0 | 4.30e-01 | 100.0% | 83.3% |
| 4940646 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.56 | 40.0 | 3.70e-01 | 78.5% | 86.7% |
| 4945994 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 38.0 | 3.68e-01 | 78.5% | 80.0% |
| 3595259 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 43.0 | 3.55e-01 | 93.8% | 50.8% |
| 3685001 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.51 | 40.0 | 2.97e-01 | 93.8% | 30.3% |