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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00228
Bact-VirSR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00228
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-117
Domain cluster:
rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00233__D118-220
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3m7kA00 | 3.30.40.220 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.65 | 60.0 | 5.49e-01 | 100.0% | 81.7% |
| 4jneA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.55 | 36.0 | 3.94e-01 | 75.7% | 83.0% |
| 2xzmZ00 | 3.30.1230.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 | 0.53 | 32.0 | 3.44e-01 | 93.7% | 69.1% |
| 1aisB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 35.0 | 3.72e-01 | 75.7% | 76.8% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 36.0 | 3.82e-01 | 80.2% | 82.5% |
| 1v66A00 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.51 | 28.0 | 3.54e-01 | 70.3% | 92.3% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3561303 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.80 | 61.0 | 5.29e-01 | 85.6% | 53.3% |
| 3397473 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.80 | 56.0 | 5.46e-01 | 72.1% | 66.7% |
| 3489023 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.77 | 58.0 | 5.70e-01 | 83.8% | 72.5% |
| 4979945 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.76 | 57.0 | 5.48e-01 | 78.4% | 78.4% |
| 1144783 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.69 | 45.0 | 3.93e-01 | 81.1% | 45.6% |
| 3879791 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.65 | 61.0 | 4.75e-01 | 100.0% | 77.8% |
| 119462 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.65 | 60.0 | 5.48e-01 | 100.0% | 81.7% |
| 4969429 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.53 | 43.0 | 3.80e-01 | 85.6% | 59.4% |
| 3264367 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 29.0 | 3.12e-01 | 86.5% | 61.0% |
| 4948085 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.52 | 39.0 | 4.14e-01 | 80.2% | 91.0% |
| 3244537 | 6060.1.1.1 ↗ | alpha arrays › Yst0336-like › Yst0336-like › Yst0336-like › PBDC1 | 0.52 | 47.0 | 4.30e-01 | 98.2% | 83.4% |
D2
high
residues 144-244
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00088__D33-109