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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00235
Bact-VirSR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00235
Identity
- Kingdom:
- phage
Quality
83.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-136
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1re5A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.60 | 44.0 | 4.70e-01 | 100.0% | 86.3% |
| 5efrA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.56 | 36.0 | 4.18e-01 | 96.5% | 100.0% |
| 1yfmA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.53 | 38.0 | 3.73e-01 | 100.0% | 68.3% |
| 1yelA00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.52 | 30.0 | 3.12e-01 | 98.2% | 58.8% |
| 2mx8A01 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.52 | 42.0 | 4.23e-01 | 96.5% | 85.8% |
| 6zhiB02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.52 | 30.0 | 3.44e-01 | 74.6% | 77.1% |
| 3otdA00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.51 | 43.0 | 3.42e-01 | 93.0% | 50.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4213337 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.64 | 41.0 | 4.36e-01 | 87.7% | 74.0% |
| 3365581 | 4952.1.1.1 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_1 | 0.62 | 42.0 | 4.21e-01 | 98.2% | 67.8% |
| 4457905 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.53 | 35.0 | 3.72e-01 | 98.2% | 77.0% |
| 4114241 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.52 | 35.0 | 3.70e-01 | 98.2% | 78.0% |
| 4169057 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.52 | 35.0 | 3.75e-01 | 98.2% | 82.1% |
| 4291782 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.52 | 35.0 | 3.62e-01 | 98.2% | 72.7% |
| 4081945 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.52 | 36.0 | 3.59e-01 | 98.2% | 70.4% |
| 4561725 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.51 | 33.0 | 3.50e-01 | 85.1% | 72.4% |
D2
high
residues 139-364
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cwaA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 27.0 | 3.76e-01 | 97.8% | 83.5% |
| 3qwnD01 | 2.40.50.500 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain | 0.61 | 19.0 | 3.34e-01 | 79.2% | 85.7% |
| 2i46A00 | 2.40.50.960 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 22.0 | 2.59e-01 | 85.0% | 50.7% |
| 1kxlA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 31.0 | 3.35e-01 | 87.2% | 72.2% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3730976 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 23.0 | 3.30e-01 | 88.1% | 69.1% |
| 2581025 | 59.1.1.1 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › RPC5 | 0.54 | 29.0 | 3.70e-01 | 81.4% | 89.1% |
| 3587188 | 2.1.1.33 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF961 | 0.53 | 21.0 | 3.04e-01 | 84.1% | 77.9% |
| 4511346 | 59.1.2.3 ↗ | beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › Paf1 | 0.53 | 33.0 | 3.85e-01 | 85.0% | 87.5% |
| 3406671 | 59.1.1.11 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Paf1 | 0.52 | 33.0 | 3.89e-01 | 85.8% | 89.4% |
| 4444757 | 59.1.1.11 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Paf1 | 0.51 | 33.0 | 3.96e-01 | 78.3% | 96.1% |