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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00249
Bact-VirSR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00249
Identity
- Kingdom:
- phage
Quality
90.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-54
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gdxA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.69 | 42.0 | 3.18e-01 | 74.0% | 27.9% |
| 3g9kD02 | 1.10.246.230 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.65 | 42.0 | 3.58e-01 | 72.0% | 41.2% |
| 3ic3A01 | 3.30.2370.10 | Alpha Beta › 2-Layer Sandwich › putative pyruvate dehydrogenase fold › putative pyruvate dehydrogenase | 0.63 | 46.0 | 4.25e-01 | 98.0% | 60.9% |
| 1z1nX01 | 3.90.10.10 | Alpha Beta › Alpha-Beta Complex › Cytochrome C3 › Cytochrome C3 | 0.62 | 43.0 | 3.44e-01 | 72.0% | 40.4% |
| 2xguB00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.61 | 51.0 | 3.71e-01 | 92.0% | 61.2% |
| 6iy8A01 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.61 | 48.0 | 3.30e-01 | 88.0% | 76.2% |
| 1o22A00 | 3.90.1000.10 | Alpha Beta › Alpha-Beta Complex › Orphan Protein Tm0875; Chain: A; › Hypothetical protein TM0875 | 0.59 | 41.0 | 2.93e-01 | 72.0% | 29.5% |
| 2iqcA00 | 1.25.40.490 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.56 | 49.0 | 3.40e-01 | 100.0% | 51.4% |
| 1vpaA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.54 | 46.0 | 3.08e-01 | 100.0% | 86.0% |
| 4dmgA03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 44.0 | 2.98e-01 | 94.0% | 38.9% |
| 4ijaA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 40.0 | 3.00e-01 | 90.0% | 44.7% |
| 3czqC00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 42.0 | 2.72e-01 | 96.0% | 22.9% |
| 1r6uA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 40.0 | 2.61e-01 | 90.0% | 65.9% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3966992 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.62 | 48.0 | 4.19e-01 | 100.0% | 56.0% |
| 3454770 | 109.4.1.621 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3 | 0.61 | 53.0 | 3.34e-01 | 100.0% | 20.0% |
| 4339431 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.61 | 47.0 | 4.34e-01 | 100.0% | 64.6% |
| 3276622 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.60 | 46.0 | 4.02e-01 | 100.0% | 56.0% |
| 3677933 | 109.4.1.1989 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TNPO3_IPO13_4th, TPR_TNPO3_IPO13_3rd | 0.59 | 46.0 | 2.65e-01 | 90.0% | 22.1% |
| 3305844 | 4033.1.1.0 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like | 0.57 | 48.0 | 3.54e-01 | 100.0% | 35.2% |
| 3833302 | 101.1.17.6 ↗ | alpha arrays › HTH › HTH › FF domain › XH | 0.56 | 51.0 | 4.09e-01 | 100.0% | 65.3% |
| 4580548 | 109.4.1.211 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19,TPR_20 | 0.55 | 47.0 | 3.14e-01 | 100.0% | 32.6% |
| 3414369 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.52 | 46.0 | 3.00e-01 | 100.0% | 22.2% |
| 3579473 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.50 | 42.0 | 3.34e-01 | 100.0% | 48.7% |