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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00256
Bact-VirSR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00256
Identity
- Kingdom:
- phage
Quality
78.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 51-103
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2b30A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.73 | 47.0 | 3.24e-01 | 92.5% | 20.0% |
| 3ml4C01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.67 | 50.0 | 4.02e-01 | 98.1% | 40.7% |
| 4hqsA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.65 | 49.0 | 3.76e-01 | 86.8% | 83.0% |
| 3gl3D00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.59 | 44.0 | 3.45e-01 | 88.7% | 80.3% |
| 2zhgA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.58 | 47.0 | 3.63e-01 | 90.6% | 74.4% |
| 1u7kA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.57 | 43.0 | 3.20e-01 | 81.1% | 56.5% |
| 2kinA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.55 | 45.0 | 3.02e-01 | 96.2% | 52.1% |
| 1b2yA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 35.0 | 2.09e-01 | 75.5% | 9.2% |
| 4hstA01 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.52 | 39.0 | 2.76e-01 | 79.2% | 58.3% |
| 4f03A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 43.0 | 3.59e-01 | 100.0% | 90.5% |
| 5byvB01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.51 | 42.0 | 2.91e-01 | 96.2% | 27.7% |
| 4uijA00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.51 | 42.0 | 3.42e-01 | 92.5% | 96.2% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3972257 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.89 | 64.0 | 7.24e-01 | 98.1% | 100.0% |
| 3974688 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.70 | 54.0 | 5.54e-01 | 94.3% | 88.0% |
| 3714022 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.66 | 37.0 | 3.58e-01 | 77.4% | 48.3% |
| 3544534 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.66 | 42.0 | 3.66e-01 | 100.0% | 43.8% |
| 3589269 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.63 | 35.0 | 3.02e-01 | 90.6% | 36.3% |
| 4164380 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.58 | 42.0 | 3.73e-01 | 79.2% | 95.0% |
| 4153905 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.57 | 38.0 | 3.22e-01 | 79.2% | 40.4% |
| 4464635 | 604.12.1.16 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › SFXNs | 0.57 | 46.0 | 3.02e-01 | 90.6% | 35.1% |
| 4654415 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.57 | 41.0 | 2.81e-01 | 79.2% | 99.5% |
| 3284729 | 101.1.9.128 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR-DNA-bind, MerR_1 | 0.56 | 41.0 | 3.41e-01 | 84.9% | 71.8% |
| 3256959 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.55 | 42.0 | 3.91e-01 | 84.9% | 84.3% |
| 3276546 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.54 | 43.0 | 2.72e-01 | 98.1% | 59.4% |
| 3799812 | 2485.1.1.71 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SelP_N | 0.53 | 40.0 | 3.47e-01 | 94.3% | 75.2% |
| 3921782 | 207.1.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 | 0.53 | 36.0 | 2.37e-01 | 71.7% | 68.5% |
| 3989311 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.52 | 44.0 | 3.39e-01 | 98.1% | 61.5% |
| 3287147 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.52 | 46.0 | 3.23e-01 | 100.0% | 87.1% |
| 3237518 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.52 | 45.0 | 3.80e-01 | 98.1% | 78.9% |
| 2867995 | 2003.1.5.148 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_36 | 0.51 | 40.0 | 2.60e-01 | 90.6% | 29.3% |
| 5064344 | 7584.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding | 0.51 | 38.0 | 2.72e-01 | 81.1% | 74.2% |
| 3199044 | 5001.1.1.88 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › STE2 | 0.50 | 45.0 | 2.83e-01 | 100.0% | 85.0% |